View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11305_high_6 (Length: 424)
Name: NF11305_high_6
Description: NF11305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11305_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 15 - 374
Target Start/End: Complemental strand, 7694228 - 7693868
Alignment:
| Q |
15 |
gggaactaggaagctaata-ggtgaatattttaagtatactcgattcaagagatgacactatgaaactagtaattggtgtggcatttaaactatttgtgg |
113 |
Q |
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| T |
7694228 |
gggaactaggaagctaataaggtgaatattttaagtatactcgattcaagagatgacactatgaaactagtaattggtgtggcatttaaactatttgtgg |
7694129 |
T |
|
| Q |
114 |
caagtttccaagatgtccaacaaaagtacatgtgataatactatccttatatactatatgatgattgtgcagctagtacattaacaagagtgattggttc |
213 |
Q |
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| T |
7694128 |
caagtttccaagatgtccaacaaaagtacatgtgataatactatccttatatactatatgatgattgtgcagctggtacattaacaagagtgattggttc |
7694029 |
T |
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| Q |
214 |
taaagaaataccctgttgcttcattttttatgtcnnnnnnnggtctcgatgctttcatgtttgttctattggtttagagcatctcttgaagtgaacacca |
313 |
Q |
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|||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7694028 |
taaagaaataccctgttgcttcatttttcaagtctttttttggtctcgatgctttcatgtttgttctattggtttagagcatctcttgtagtgaacacca |
7693929 |
T |
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| Q |
314 |
tttaaggttcttaatctatttttaatgggtcttacttagccacaacagttgttttggcagc |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7693928 |
tttaaggttcttaatctatttttaatgggtcttacttagccacaacagttgttttagcagc |
7693868 |
T |
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