View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11305_high_8 (Length: 403)

Name: NF11305_high_8
Description: NF11305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11305_high_8
NF11305_high_8
[»] chr8 (3 HSPs)
chr8 (1-206)||(41480982-41481187)
chr8 (202-390)||(41481816-41482004)
chr8 (220-390)||(41485100-41485271)
[»] chr2 (3 HSPs)
chr2 (229-343)||(45386079-45386193)
chr2 (16-115)||(45386499-45386598)
chr2 (341-390)||(45386003-45386052)
[»] chr3 (7 HSPs)
chr3 (290-388)||(5701203-5701301)
chr3 (334-390)||(5697778-5697834)
chr3 (316-390)||(5694799-5694873)
chr3 (333-387)||(5736431-5736485)
chr3 (333-387)||(5773543-5773597)
chr3 (100-200)||(5736588-5736694)
chr3 (100-200)||(5773700-5773806)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 41480982 - 41481187
Alignment:
Q  1 atcagaattgaatagattgctcatcagaattagcttctctcattgtgatatccttttggacagttgaagactgctttctgttcacggtcaggagactatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41480982 atcagaattgaatagattgctcatcagaattagcttctctcattgtgatatccttttggacagttgaagactgctttctgttcacggtcaggagactatt 41481081  T
Q  101 actttatttcaacgataaccaatcaaggaactcttgtaactgattggattatgttcaactacataacactaaaatctccctttttctctaaaatcagtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41481082 actttatttcaacgataaccaatcaaggaactcttgtaactgattggattatgttcaactacataacactaaaatctccctttttctctaaaatcagtat 41481181  T
Q  201 cagaat 206  Q
     |||||    
T  41481182 tagaat 41481187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 202 - 390
Target Start/End: Original strand, 41481816 - 41482004
Alignment:
Q  202 agaatactctccatcctttttctagaacaaacttacagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttcttt 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41481816 agaatactctccatcctttttctagaacaaacttacagcagatgtcatctacttttcttgacattggtcacatgttttcgtactctagaatggtttcttt 41481915  T
Q  302 attggcaaagttgtgaagccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgct 390  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41481916 attggcaaagttgtgaagccacacctcgtaatcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgct 41482004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 220 - 390
Target Start/End: Original strand, 41485100 - 41485271
Alignment:
Q  220 tttctagaacaaactt-acagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttctttattggcaaagttgtgaa 318  Q
    |||||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||||| ||||||||||||||||||||| |||| | | |||||    
T  41485100 tttctagaacaaactttacagcagatgtcatctacttttcttgtcattggtgacatgttttcgcactctagaatggtttctttatgggcagaatagtgaa 41485199  T
Q  319 gccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgct 390  Q
    |||||||||| || ||||||||||||| | |||||||| |||| ||||||||||||||  ||||||||||||    
T  41485200 gccacacctcatattcacatgttttgctggaaccacaagattcgcaactagtactattccgtgcttgttgct 41485271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 229 - 343
Target Start/End: Complemental strand, 45386193 - 45386079
Alignment:
Q  229 caaacttacagcagatgtcatctacttttcatgacattggtcacatgttttcgtactctagaatggtttctttattggcaaagttgtgaagccacacctc 328  Q
    |||||||| | || || ||||||||||||| || |||||||  |||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||    
T  45386193 caaacttatatcaaatttcatctacttttcttgtcattggtggcatgttttcgcactctagaatggtttctttataggcagagttgtgaagccacgcctc 45386094  T
Q  329 gtagtcacatgtttt 343  Q
     || |||||||||||    
T  45386093 atattcacatgtttt 45386079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 45386598 - 45386499
Alignment:
Q  16 attgctcatcagaattagcttctctcattgtgatatccttttggacagttgaagactgctttctgttcacggtcaggagactattactttatttcaacga 115  Q
    |||||| ||||||||||| || ||| ||| |||||||||||| |||||||  ||||||||||||| ||| |||||||||||||  ||||||| |||||||    
T  45386598 attgcttatcagaattagtttatctgattctgatatccttttagacagttacagactgctttctgctcatggtcaggagactagcactttatatcaacga 45386499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 341 - 390
Target Start/End: Complemental strand, 45386052 - 45386003
Alignment:
Q  341 tttgcagtaaccacaatattcacaactagtactattttgtgcttgttgct 390  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  45386052 tttgcagtaaccacaagattcacaactagtactattttgtacttgttgct 45386003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 388
Target Start/End: Complemental strand, 5701301 - 5701203
Alignment:
Q  290 aatggtttctttattggcaaagttgtgaagccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttg 388  Q
    ||||||||||| || || |  |||||||||||||||||| || ||||||||||||||| |||||||| |||||| |||||| |||| | ||||||||||    
T  5701301 aatggtttcttcatgggaagtgttgtgaagccacacctcatactcacatgttttgcagaaaccacaagattcacgactagttctatctggtgcttgttg 5701203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 5697834 - 5697778
Alignment:
Q  334 cacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgct 390  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||    
T  5697834 cacatgttttgcattaaccccaaaattcacaactagtactattttgtgcttgttgct 5697778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 390
Target Start/End: Complemental strand, 5694873 - 5694799
Alignment:
Q  316 gaagccacacctcgtagtcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgttgct 390  Q
    |||||||||| || |  |||||||||||||| |||||  || ||||||||||||||||||||| |||||||||||    
T  5694873 gaagccacacttcattttcacatgttttgcaataaccctaaaattcacaactagtactattttttgcttgttgct 5694799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 5736485 - 5736431
Alignment:
Q  333 tcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgtt 387  Q
    |||||||||||||| |||||  || ||||||||||||||||||||| ||||||||    
T  5736485 tcacatgttttgcaataaccctaaaattcacaactagtactattttttgcttgtt 5736431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 333 - 387
Target Start/End: Complemental strand, 5773597 - 5773543
Alignment:
Q  333 tcacatgttttgcagtaaccacaatattcacaactagtactattttgtgcttgtt 387  Q
    |||||||||||||| |||||  || ||||||||||||||||||||| ||||||||    
T  5773597 tcacatgttttgcaataaccctaaaattcacaactagtactattttttgcttgtt 5773543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 5736694 - 5736588
Alignment:
Q  100 tactttatttcaacgataaccaatcaaggaactcttgtaactgattggattatgttcaactac------ataacactaaaatctccctttttctctaaaa 193  Q
    |||||||||| || |||| |||||||||||||||   ||  ||||| ||||||||||||||||      ||||||||||||||||||||| || ||| |     
T  5736694 tactttatttaaatgatatccaatcaaggaactcccatatatgattagattatgttcaactacatcggtataacactaaaatctccctttctccctagat 5736595  T
Q  194 tcagtat 200  Q
    |||||||    
T  5736594 tcagtat 5736588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 200
Target Start/End: Complemental strand, 5773806 - 5773700
Alignment:
Q  100 tactttatttcaacgataaccaatcaaggaactcttgtaactgattggattatgttcaactac------ataacactaaaatctccctttttctctaaaa 193  Q
    |||||||||| || |||| |||||||||||||||   ||  ||||| ||||||||||||||||      ||||||||||||||||||||| || ||| |     
T  5773806 tactttatttaaatgatatccaatcaaggaactcccatatatgattagattatgttcaactacatcggtataacactaaaatctccctttctccctagat 5773707  T
Q  194 tcagtat 200  Q
    |||||||    
T  5773706 tcagtat 5773700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University