View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11305_low_1 (Length: 1018)
Name: NF11305_low_1
Description: NF11305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11305_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 667; Significance: 0; HSPs: 19)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 14 - 704
Target Start/End: Original strand, 23257709 - 23258399
Alignment:
| Q |
14 |
catattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccgcgacaggtacgacggtgtcaatatcattaatcatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
23257709 |
catattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccacgacaggtactacggtgtcaatatcattaatcatt |
23257808 |
T |
|
| Q |
114 |
aaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagccgccacaccgagt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
23257809 |
aaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgccacaccgagt |
23257908 |
T |
|
| Q |
214 |
ctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtgttggaaaagtccctagccaaat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23257909 |
ctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtgttggaaaagtccccagccaaat |
23258008 |
T |
|
| Q |
314 |
cctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacatcgggtggcgagtttccttgaagatc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23258009 |
cctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacatcgggtggcgagtttccttgaagatc |
23258108 |
T |
|
| Q |
414 |
ttcctccctgctcgcttctttgggttactagccgctaatcgtacctccaaattcggagttgacatgtcatacgaagaagatgctgttgagggaatggatt |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23258109 |
ttcctccctgctcgcttctttgggttactagccgctaatcgtacctccgaattcggagttgacatgtcatacgaagaagatgctgttgagggaatggatt |
23258208 |
T |
|
| Q |
514 |
gtgaataggaagagttgttagtagtaaacatatgtatgtgttggagagagtggaaaattgttttaagaggaaaagtggcaattggagagagagttgtttt |
613 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23258209 |
gtgaataggaagagttgttagtagtaaacatatgtatgtgttggagagagtggaaaattgttttaagaggaaaagtggcaattggagagagagttgtttt |
23258308 |
T |
|
| Q |
614 |
taagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttgaaggaaagaataaggtaacaggtagagtatttgtaa |
704 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23258309 |
taagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttgaaggaaagaataaggtaacaggtagagtatttgtaa |
23258399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 14 - 690
Target Start/End: Original strand, 23247321 - 23247995
Alignment:
| Q |
14 |
catattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccgcgacaggtacgacggtgtcaatatcattaatcatt |
113 |
Q |
| |
|
||||||||||||||||| || ||| || |||||||||||||||||||||| |||||||||||| ||||| ||||| |||||||||| ||| ||||| |
|
|
| T |
23247321 |
catattcaacatttcctcctgttcatcaacttccacacaaaacatattcagctcctttgtggcgacgacatctacgatagtgtcaatattgttagtcatt |
23247420 |
T |
|
| Q |
114 |
aaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagccgccacaccgagt |
213 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||| | ||| |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
23247421 |
aaagtattgtctggtctaaaagcttcggccgcttttgtagctgccttttgaatatcttttattgcggaagttgctggaataggaaggcgccacaccgagt |
23247520 |
T |
|
| Q |
214 |
ctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtgttggaaaagtccctagccaaat |
313 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||| || |||||||| |
|
|
| T |
23247521 |
ctgagaaattgagacaggcatagcggcccctcaatgccattgcagcaacatcgtgggctcgggcagccatctccggtgttggaaaagttcccagccaaat |
23247620 |
T |
|
| Q |
314 |
cctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacatcgggtggcgagtttccttgaagatc |
413 |
Q |
| |
|
||| |||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| || ||| |
|
|
| T |
23247621 |
cctattctttgtgttcggctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagaccgggtggcgagtttccttaaatatc |
23247720 |
T |
|
| Q |
414 |
ttcctccctgctcgcttctttgggttactagccgctaatcgtacctccaaattcggagttgacatgtcatacgaagaagatgctgttgagggaatggatt |
513 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||||| || ||||| || ||| | ||| ||| | | |||| | || |||||| |||||| | |
|
|
| T |
23247721 |
ttcctccctgctcgcttcttcgggttacttgatgctaaccgcacctcagaacccggtgatgatgcgtcgaagggagaaaaatcttttgaggaaatggagt |
23247820 |
T |
|
| Q |
514 |
gtgaataggaagagttgttagtagtaaacatatgtatgtgttggagagagtggaaaattgttttaagaggaaaagtggcaattggagagagagttgtttt |
613 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||| ||| |
|
|
| T |
23247821 |
gtgaataggaagagttgttagtactaatcatatgtatgtgttggatagagtggaaaatggttttgagaggtaaagtgggaattg--gagagagtttgttt |
23247918 |
T |
|
| Q |
614 |
taagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttgaaggaaagaataaggtaacagg |
690 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
23247919 |
taagagaatgaagagtaaggtgtgttatatatatagggaagcattgttgtgtttgaaggaaagaataaggtaacagg |
23247995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 32 - 690
Target Start/End: Original strand, 23251751 - 23252407
Alignment:
| Q |
32 |
ctcttcttcgacttccacacaaaacatattcaactcctttgtggccgcgacaggtacgacggtgtcaatatcattaatcattaaagtcttgtctggtcta |
131 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| ||||| ||| || | |||| ||| ||||||||||| ||| | |||||||||| |||||||||||| |
|
|
| T |
23251751 |
ctcttcttcgacttcaacacgaaacatattcagctcctgtgttgcgacaacagctacaacggtgtcaatgtcactggtcattaaagtattgtctggtcta |
23251850 |
T |
|
| Q |
132 |
aaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagccgccacaccgagtctgcaaaattgagacagg |
231 |
Q |
| |
|
||||||||||| |||| | ||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23251851 |
aaagcttcggcggcttttgtagctgccttttgaatatcttttatcgcggaagttgctggaataggaaggcgccacaccgagtctgcaaaattgagacagg |
23251950 |
T |
|
| Q |
232 |
catagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtgttggaaaagtccctagccaaatcctggtctttgtgttggg |
331 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||| || |
|
|
| T |
23251951 |
catagcggcccctcaatgctatcgcggcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaatcctattctttgtgttcgg |
23252050 |
T |
|
| Q |
332 |
ttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacatcgggtggcgagtttccttgaagatcttcctccctgctcgcttc |
431 |
Q |
| |
|
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| | ||||| ||||||||||| || ||||||||||| |||| |||| |
|
|
| T |
23252051 |
ctccctcatttcacaaacccatttatttaagttcctcttcctcacacctctatagacagggtgacgagtttccttaaatatcttcctccccgctctcttc |
23252150 |
T |
|
| Q |
432 |
tttgggttactagccgctaatcgtacctccaaattcggagttgacatgtcatacgaagaagatgctgttgagggaatggattgtgaataggaagagttgt |
531 |
Q |
| |
|
|| ||||| || | ||||| || ||||| ||| ||| | ||| ||| | | |||| | || |||||| |||||| ||||||||||||||||||| |
|
|
| T |
23252151 |
ttcgggttgcttgatgctaaccgcacctcagaatccggtgatgatgcgtcgaagggagaaaaatcttttgaggaaatggagtgtgaataggaagagttgt |
23252250 |
T |
|
| Q |
532 |
tagtagtaaacatatgtatgtgttggagagagtggaaaattgttttaagaggaaaagtggcaattggagagagagttgtttttaagagaatgaagagtaa |
631 |
Q |
| |
|
||||| | | ||||||||||||||||| |||||||||||| ||||| ||||| ||||||| ||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
23252251 |
tagtacttatcatatgtatgtgttggatagagtggaaaatggttttgagaggtaaagtggtaattg--gagagagtttgttttaagagaatgaagagtaa |
23252348 |
T |
|
| Q |
632 |
ggtgtgttatatatatagggaagcatagttgagtttgaaggaaagaataaggtaacagg |
690 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
23252349 |
ggtgtgttatatatatagggaagcatagttgtgtttgaaggaaagaataaggcaacagg |
23252407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 14 - 562
Target Start/End: Original strand, 23266270 - 23266812
Alignment:
| Q |
14 |
catattcaacatttcctgctcttcttcgacttccacacaaaacatattcaactcctttgtggccgcgacaggtacgacggtgtcaatatcattaatcatt |
113 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| | |||| ||| || || ||||| | |||||||| |
|
|
| T |
23266270 |
catattcaacatttcct---cttcttc---ttccacacaaaacatattcaactcctttgtggcgacaacagctacaacagtctcaatgttggtaatcatt |
23266363 |
T |
|
| Q |
114 |
aaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagccgccacaccgagt |
213 |
Q |
| |
|
| ||| ||||||||||||||||||||||| |||| | ||| |||||||||||||||||||| | ||||||| ||||||||||||||||||||||||| | |
|
|
| T |
23266364 |
atagtattgtctggtctaaaagcttcggcggcttttgtagctgccttttgaatatcttttattgaggaagttgctggaataggaagccgccacaccgaat |
23266463 |
T |
|
| Q |
214 |
ctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtgttggaaaagtccctagccaaat |
313 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||| |||| |||||||||||| ||||||||||| |
|
|
| T |
23266464 |
ctgcaaaattgagacaggcgtagcgacccctcaatgccatcgcagcaacatcgtgggctcgggctgccatctcggctgttggaaaagttcctagccaaat |
23266563 |
T |
|
| Q |
314 |
cctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacatcgggtggcgagtttccttgaagatc |
413 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
23266564 |
tctagtcttcgtgttgggttccctcatttcacaaacccatttatctaagttcctcttccttacacctctatacaccgggtggcgagtttccttgaatatc |
23266663 |
T |
|
| Q |
414 |
ttcctccctgctcgcttctttgggttactagccgctaatcgtacctccaaattcggagttgacatgtcatacgaagaagatgctgttgagggaatggatt |
513 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| |||||||||| |||| | | ||| ||| | | || |||||||||||| ||||| |||||| | |
|
|
| T |
23266664 |
ttcctccctgctctcttcttcgggttactagctgctaatcgtatctccgattccggtaatgagttatagtaggaagaagatgcttctgaggaaatggagt |
23266763 |
T |
|
| Q |
514 |
gtgaataggaagagttgttagtagtaaacatatgtatgtgttggagaga |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23266764 |
gtgaataggaagagttgttagtagtaaacatatgtatgtgttggagaga |
23266812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 90 - 421
Target Start/End: Original strand, 23283458 - 23283789
Alignment:
| Q |
90 |
acggtgtcaatatcattaatcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatctttta--tc-gcggaagtta |
186 |
Q |
| |
|
||||||||||| || ||| |||||||||||||||||||||| ||||| ||||| ||||| ||||| ||| ||||||| |||||| || ||||| | |
|
|
| T |
23283458 |
acggtgtcaatgtcgttagtcattaaagtcttgtctggtctgaaagcctcggcggcttctgcagctgccctttgaatgtcttttgcttcagcggagg--- |
23283554 |
T |
|
| Q |
187 |
ctggaataggaagccgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttc |
286 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||| || ||||| || |
|
|
| T |
23283555 |
caggaataggaagcctccacaccgagtctgcaaagttgagacaggcatagcggccccttaatgccatggctgcaacgtcgtgtgctcgtgcagccatctc |
23283654 |
T |
|
| Q |
287 |
gggtgttggaaaagtccctagccaaatcctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatac |
386 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23283655 |
agccgttggaaaagtccctagccaaatcctagtctttttgttgggttccctcatttcacaaacccatttatctaagttcctcttcctcacacccctatac |
23283754 |
T |
|
| Q |
387 |
atcgggtggcgagtttccttgaagatcttcctccc |
421 |
Q |
| |
|
| |||||||||||| ||||| || |||||||||| |
|
|
| T |
23283755 |
accgggtggcgagtctccttaaacttcttcctccc |
23283789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 109 - 451
Target Start/End: Original strand, 23289790 - 23290132
Alignment:
| Q |
109 |
tcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatctttta--tc-gcggaagttactggaataggaagccgcca |
205 |
Q |
| |
|
|||||||||||||||||||||| ||||| || || ||||| |||| ||| ||||||| |||||| || ||||| | | |||||||||||| ||| |
|
|
| T |
23289790 |
tcattaaagtcttgtctggtctgaaagcctcagcggcttctccagctgccctttgaatgtcttttgcttcagcggagg---caggaataggaagcttcca |
23289886 |
T |
|
| Q |
206 |
caccgagtctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtgttggaaaagtccct |
305 |
Q |
| |
|
| ||||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||| || ||||| ||||| |||| ||||| |||||||||| |
|
|
| T |
23289887 |
cgccgagtctgcaaagttgagacaggcgtagcggcccctcaatgcaattgctgcaacgtcgtgtgcacgggcagccatctcggctgttgcaaaagtccct |
23289986 |
T |
|
| Q |
306 |
agccaaatcctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacatcgggtggcgagtttcct |
405 |
Q |
| |
|
||||||||||| ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
23289987 |
agccaaatcctagtcttcttatttggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacaccgggtggcgagtctcct |
23290086 |
T |
|
| Q |
406 |
tgaagatcttcctccctgctcgcttctttgggttactagccgctaa |
451 |
Q |
| |
|
| || |||||||||||||| | || |||||| ||| |||||||| |
|
|
| T |
23290087 |
taaacttcttcctccctgctggtttttttgggcaactcgccgctaa |
23290132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 145; E-Value: 9e-76
Query Start/End: Original strand, 198 - 454
Target Start/End: Original strand, 23587035 - 23587291
Alignment:
| Q |
198 |
agccgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtgttggaa |
297 |
Q |
| |
|
||||||||| | ||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||||||| |||| ||||||| |
|
|
| T |
23587035 |
agccgccacgctgagtctgcaaagttgagacaagcgtagcggcccctcaatgccattgcagcaacatcgtgggcacgggctgccatctcggcagttggaa |
23587134 |
T |
|
| Q |
298 |
aagtccctagccaaatcctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacatcgggtggcg |
397 |
Q |
| |
|
||||||||||||||||| | ||||| |||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||| | |||||||| |
|
|
| T |
23587135 |
aagtccctagccaaatcttagtcttcttgttaggctccctcatttcacaaacccatttatctaagttcctcttcctcactcctctatagactgggtggcg |
23587234 |
T |
|
| Q |
398 |
agtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaatcg |
454 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||| ||| || | ||||||||||| |
|
|
| T |
23587235 |
agtttccttgaacttcttcctccctgcacgcttcttcggggtagttgccgctaatcg |
23587291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 830 - 1006
Target Start/End: Original strand, 23258522 - 23258699
Alignment:
| Q |
830 |
cacttggctcaaaatgaacaaggttattaaaatatcctctttctattttattttatttta--aggcatgttatcaaaatatctattgctgcgtcactata |
927 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
23258522 |
cacttggctcaaaatgaacaaggttatcaaaatatcctctttctattttattttattttataaggcatgttatgaaaatatctac-gctgcgtcactata |
23258620 |
T |
|
| Q |
928 |
caaggttattatatgattcagaggaatttactctttttggctctccatccctttcaaacccacatgttattgattgcgc |
1006 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23258621 |
caaggttattatatgattcagaggaatttactatttttggctctccatccctttcaaacccacatgttactgattgcgc |
23258699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 93 - 436
Target Start/End: Original strand, 23391243 - 23391586
Alignment:
| Q |
93 |
gtgtcaatatcattaatcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaa |
192 |
Q |
| |
|
|||||||| |||||| | ||| |||||||||||||||| ||||| || || || | |||||||||||||| ||||||||| | | || | || | |
|
|
| T |
23391243 |
gtgtcaatgtcattagtaattgaagtcttgtctggtctgaaagcctcagcggcctgtgcagccgccttttgtatatcttttgcctgagtggtggcaggta |
23391342 |
T |
|
| Q |
193 |
taggaagccgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtgt |
292 |
Q |
| |
|
|||| ||||||||| | ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| || | || |
|
|
| T |
23391343 |
tagggagccgccacgcggagtctgcaaagttgagacaggcgtagcggcccctcaatgccattgcggcaacatcatgtgctcgggctgccatctccgcagt |
23391442 |
T |
|
| Q |
293 |
tggaaaagtccctagccaaatcctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacatcggg |
392 |
Q |
| |
|
||||||||| ||||||||||| | ||||| | || ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| | |||| |
|
|
| T |
23391443 |
tggaaaagtgcctagccaaattttagtcttcttatttggttccctcatttcacacacccatttatctaagtttcttttcctcacacccctatataccggg |
23391542 |
T |
|
| Q |
393 |
tggcgagtttccttgaagatcttcctccctgctcgcttctttgg |
436 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||||||||||| |
|
|
| T |
23391543 |
tggcgagtctccttgaacttcttcctccctgcacgcttctttgg |
23391586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 112 - 433
Target Start/End: Original strand, 23633983 - 23634304
Alignment:
| Q |
112 |
ttaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagccgccacaccga |
211 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||| ||||||| |||||| |||||| || || | | ||| | ||||||||||||||| | | || |
|
|
| T |
23633983 |
ttaaagtcttgtctggtctgaaagcctcggcagcttctgcagccgtcttttgtatatctcttgtctctgtagtggcaggaataggaagccgcgaggcaga |
23634082 |
T |
|
| Q |
212 |
gtctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtgttggaaaagtccctagccaa |
311 |
Q |
| |
|
||| |||||||| |||||||| | ||| || || ||||||| ||| || ||||| || ||||| |||||||| |||| ||||||||||||||||||||| |
|
|
| T |
23634083 |
gtcagcaaaattaagacaggcgttgcgacctcttaatgccaatgccgcgacatcatgtgctcgtgctgccatctcggccgttggaaaagtccctagccaa |
23634182 |
T |
|
| Q |
312 |
atcctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacatcgggtggcgagtttccttgaaga |
411 |
Q |
| |
|
||| | ||||| |||| || |||||||||||||||||||||||||||||||||||| |||||||||| || |||| ||||||||| || |||||||| |
|
|
| T |
23634183 |
atcttagtcttcttgttaggctccctcatttcacacacccatttatctaagttcctcctcctcacacccctgtacaccgggtggcgtgtctccttgaact |
23634282 |
T |
|
| Q |
412 |
tcttcctccctgctcgcttctt |
433 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
23634283 |
tcttcctccctgcacgcttctt |
23634304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 104 - 437
Target Start/End: Original strand, 23583058 - 23583390
Alignment:
| Q |
104 |
attaatcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagccgc |
203 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||| | ||| || || ||||| |||||||| ||||| ||| | | |||| | || | || |||||| |
|
|
| T |
23583058 |
attagtcaataaagtcttgtctggtctgaaagccttggcggcctctgcagcagccttttgtatatcctttgcctgagtagttgcaggtttggggagccgc |
23583157 |
T |
|
| Q |
204 |
cacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtgttggaaaagtcc |
303 |
Q |
| |
|
|| | ||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||| |||| |||||| || | ||||||||||||| |
|
|
| T |
23583158 |
catgctgagtctgcaaagttgagacaggcgtagcggccc-tcaatgccattgcagcaacatcgtgggcacgggttgccatctccgcagttggaaaagtcc |
23583256 |
T |
|
| Q |
304 |
ctagccaaatcctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacatcgggtggcgagtttc |
403 |
Q |
| |
|
||||||||||| | ||||| |||| || | |||||||||||| |||||||||||||||||||||||||| ||||| ||||| | |||||||||||| || |
|
|
| T |
23583257 |
ctagccaaatcttagtcttcttgttaggcttcctcatttcacaaacccatttatctaagttcctcttccttacacccctatagaccgggtggcgagtctc |
23583356 |
T |
|
| Q |
404 |
cttgaagatcttcctccctgctcgcttctttggg |
437 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||| |
|
|
| T |
23583357 |
cttgaacttcttcctccctgcacgcttctttggg |
23583390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 109 - 433
Target Start/End: Original strand, 23506800 - 23507124
Alignment:
| Q |
109 |
tcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagccgccacac |
208 |
Q |
| |
|
|||||| ||||||| ||||||| || || || |||||||||||||||| |||||| ||||||||| || || |||| | |||||||| ||| | | | |
|
|
| T |
23506800 |
tcattacagtcttgcctggtctgaatgcctcagcagcttcagcagccgtcttttgtatatcttttgtctcgcaagtagcaggaatagggagcgtcaaggc |
23506899 |
T |
|
| Q |
209 |
cgagtctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgggtgttggaaaagtccctagc |
308 |
Q |
| |
|
|||||||||||| ||||||||||| | || || |||| |||| ||| |||||||| ||||| || |||||||| |||| |||||||||||| |||||| |
|
|
| T |
23506900 |
cgagtctgcaaagttgagacaggcgtcgccacctttcaacgccagtgccgcaacatcatgggcccgagctgccatctcggctgttggaaaagttcctagc |
23506999 |
T |
|
| Q |
309 |
caaatcctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacatcgggtggcgagtttccttga |
408 |
Q |
| |
|
|||||| |||||||| |||| || | || |||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
23507000 |
caaatcttggtctttttgttaggctgtcttatttcacacacccatttatctaggttcctactcctcacacccctatacaccgggtggcgagtttccttga |
23507099 |
T |
|
| Q |
409 |
agatcttcctccctgctcgcttctt |
433 |
Q |
| |
|
| ||||||||||| | |||||||| |
|
|
| T |
23507100 |
atttcttcctccctccacgcttctt |
23507124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 595 - 702
Target Start/End: Original strand, 23266804 - 23266911
Alignment:
| Q |
595 |
ttggagagagagttgtttttaagagaatgaagagtaaggtgtgttatatatatagggaagcatagttgagtttgaaggaaagaataaggtaacaggtaga |
694 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||||||||||||| ||| |
|
|
| T |
23266804 |
ttggagagatagttgtttttaagagaatgaagagtaaggtgtgttacatatatagtgaagcatacttggttttgaaggaaagaataaggtaacaggcaga |
23266903 |
T |
|
| Q |
695 |
gtatttgt |
702 |
Q |
| |
|
|| ||||| |
|
|
| T |
23266904 |
gtgtttgt |
23266911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 189 - 451
Target Start/End: Original strand, 23594092 - 23594354
Alignment:
| Q |
189 |
ggaataggaagccgccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatcgtgggctcgggctgccatttcgg |
288 |
Q |
| |
|
|||||| | |||||||| | ||||||||||| |||||||| || || | || |||||||||| || || ||||| |||||||| ||| |||| || | |
|
|
| T |
23594092 |
ggaataaggagccgccatgcagagtctgcaaagttgagacaagcgtaacaacctctcaatgccaatgtcgcgacatcatgggctcgtgcttccatctcag |
23594191 |
T |
|
| Q |
289 |
gtgttggaaaagtccctagccaaatcctggtctttgtgttgggttccctcatttcacacacccatttatctaagttcctcttcctcacacctctatacat |
388 |
Q |
| |
|
|||||||||| |||||||| ||| | ||| | |||| || |||||||||||||||||||||||| |||| ||||| |||||||||| ||||| || |
|
|
| T |
23594192 |
ccattggaaaagttcctagccatatcttagtcatcttgttaggctccctcatttcacacacccatttacctaaattcctactcctcacacccctatagat |
23594291 |
T |
|
| Q |
389 |
cgggtggcgagtttccttgaagatcttcctccctgctcgcttctttgggttactagccgctaa |
451 |
Q |
| |
|
|||||||| ||| ||||||| |||| || | ||| |||||||||||| |||| || ||||| |
|
|
| T |
23594292 |
cgggtggcaagtcaccttgaacttctttctgcatgcacgcttctttggggtacttgcagctaa |
23594354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 265
Target Start/End: Original strand, 23506631 - 23506794
Alignment:
| Q |
102 |
tcattaatcattaaagtcttgtctggtctaaaagcttcggcagcttcagcagccgccttttgaatatcttttatcgcggaagttactggaataggaagcc |
201 |
Q |
| |
|
|||||| || ||||||||||||||||||| ||||| || | |||||| |||||||| ||||| |||||| || || | ||| | ||||||||||||| |
|
|
| T |
23506631 |
tcattagtcgttaaagtcttgtctggtctgaaagcctcagtagcttctgcagccgcgttttgtatatctcttgtctctttagtggcaggaataggaagcc |
23506730 |
T |
|
| Q |
202 |
gccacaccgagtctgcaaaattgagacaggcatagcggcccctcaatgccattgcggcaacatc |
265 |
Q |
| |
|
|| | ||||||||||||| ||||||||||| | ||| || || ||||||| ||| || ||||| |
|
|
| T |
23506731 |
gcgaggccgagtctgcaaagttgagacaggcgttgcgacctcttaatgccaatgccgcgacatc |
23506794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 725 - 768
Target Start/End: Original strand, 23258418 - 23258461
Alignment:
| Q |
725 |
agtgagctatttcccaagttggaggctttgtgattggttatcaa |
768 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23258418 |
agtgagctatttcccaagttggaggctgtgtgattggttatcaa |
23258461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 728 - 768
Target Start/End: Original strand, 23266934 - 23266974
Alignment:
| Q |
728 |
gagctatttcccaagttggaggctttgtgattggttatcaa |
768 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23266934 |
gagctatttcctaagttggaggctttgtgattggttatcaa |
23266974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 23283340 - 23283391
Alignment:
| Q |
14 |
catattcaacatttcctgctcttcttcgacttccacacaaaacatattcaac |
65 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
23283340 |
catattcaacacttcctcttctttttcgacttccacacaaaacatattcaac |
23283391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 23289680 - 23289731
Alignment:
| Q |
14 |
catattcaacatttcctgctcttcttcgacttccacacaaaacatattcaac |
65 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
23289680 |
catattcaacacttcctcttctttttcgacttccacacaaaacatattcaac |
23289731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 3996385 - 3996440
Alignment:
| Q |
258 |
gcaacatcgtgggctcgggctgccatttcgggtgttggaaaagtccctagccaaat |
313 |
Q |
| |
|
||||| || |||||||| |||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
3996385 |
gcaacgtcatgggctcgagctgccatctcgggtgttggataagtgcctagccaaat |
3996440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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