View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11305_low_10 (Length: 325)

Name: NF11305_low_10
Description: NF11305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11305_low_10
NF11305_low_10
[»] chr1 (9 HSPs)
chr1 (11-314)||(43770111-43770413)
chr1 (20-72)||(27455022-27455074)
chr1 (23-70)||(1138570-1138617)
chr1 (20-67)||(15059558-15059605)
chr1 (20-71)||(24674383-24674434)
chr1 (20-67)||(47091684-47091731)
chr1 (20-69)||(7946836-7946885)
chr1 (20-69)||(8077639-8077688)
chr1 (11-64)||(52135127-52135180)
[»] chr5 (8 HSPs)
chr5 (20-69)||(1827686-1827735)
chr5 (20-69)||(27498887-27498936)
chr5 (20-67)||(12317306-12317353)
chr5 (14-67)||(23270672-23270725)
chr5 (14-63)||(42006791-42006840)
chr5 (20-68)||(11465063-11465111)
chr5 (20-68)||(13108605-13108653)
chr5 (20-68)||(32059596-32059644)
[»] chr7 (10 HSPs)
chr7 (11-63)||(1469114-1469166)
chr7 (20-67)||(40332097-40332144)
chr7 (14-67)||(31197589-31197642)
chr7 (20-68)||(10091185-10091233)
chr7 (20-67)||(11997847-11997894)
chr7 (20-63)||(28003838-28003881)
chr7 (20-66)||(7799988-7800034)
chr7 (20-68)||(18044104-18044152)
chr7 (20-64)||(28089817-28089861)
chr7 (20-68)||(39145808-39145856)
[»] chr6 (7 HSPs)
chr6 (20-68)||(11007158-11007206)
chr6 (11-68)||(9208245-9208302)
chr6 (20-69)||(9843930-9843979)
chr6 (20-69)||(34147338-34147387)
chr6 (20-69)||(34159954-34160003)
chr6 (20-68)||(22576060-22576108)
chr6 (20-68)||(28672060-28672108)
[»] chr2 (4 HSPs)
chr2 (20-71)||(11941366-11941417)
chr2 (11-67)||(8379416-8379472)
chr2 (20-67)||(44946209-44946256)
chr2 (20-68)||(4852551-4852599)
[»] chr3 (8 HSPs)
chr3 (20-69)||(40940817-40940866)
chr3 (20-67)||(25289870-25289917)
chr3 (20-69)||(4462625-4462674)
chr3 (20-69)||(35492903-35492952)
chr3 (23-67)||(4252555-4252599)
chr3 (23-63)||(27887426-27887466)
chr3 (20-68)||(30807309-30807357)
chr3 (20-68)||(46576341-46576389)
[»] chr4 (5 HSPs)
chr4 (20-67)||(52983613-52983660)
chr4 (21-62)||(32942369-32942410)
chr4 (11-68)||(41621743-41621800)
chr4 (15-67)||(5609353-5609405)
chr4 (23-63)||(41085024-41085064)
[»] scaffold0199 (1 HSPs)
scaffold0199 (20-68)||(8563-8611)
[»] chr8 (2 HSPs)
chr8 (20-68)||(4718642-4718690)
chr8 (24-64)||(21667551-21667591)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 43770111 - 43770413
Alignment:
Q  11 tgagatgaacaaactccaagatttcaagccaaccactagatcaaccacaaatgggttaactatctcctctttaatcatgaacaatttttatcaatctctc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43770111 tgagatgaacaaactccaagatttcaagccaaccactagatcaaccacaaatgggttaactatctcctctttaatcatgaacaatttttatcaatctctc 43770210  T
Q  111 ctctgataattatcatttggaatatatgggaattgaaaagaagatagcgataagttctcttacagggatttttgacaaggnnnnnnnnaaaagaattttg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||        ||||||||||||    
T  43770211 ctctgataattatcatttggaatatatgggaattgaaaagaagatagcgataagttctcttacaaggaattttgacaagg-tttttttaaaagaattttg 43770309  T
Q  211 acaagcttataaaacaagtcgaaaatatattatgtacaaaggatgaattaattagggtatctgagctcaattcttggatgaaacaattttatgtttgatt 310  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||    
T  43770310 acaagcttataaaacaagtcaaaaatatattatgtacaaaggatgaattaattagagtatctgagctcaattcttggatgaaacaattttatatctgatt 43770409  T
Q  311 ttat 314  Q
    ||||    
T  43770410 ttat 43770413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 27455022 - 27455074
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggttaacta 72  Q
    |||||||||||||  |||||||||||||||| ||||| |||||||||||||||    
T  27455022 caaactccaagatcccaagccaaccactagaccaaccccaaatgggttaacta 27455074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Complemental strand, 1138617 - 1138570
Alignment:
Q  23 actccaagatttcaagccaaccactagatcaaccacaaatgggttaac 70  Q
    |||||||||| |||||||||||||||| |||||| |||||||||||||    
T  1138617 actccaagatctcaagccaaccactaggtcaaccccaaatgggttaac 1138570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 15059558 - 15059605
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 67  Q
    |||||||||||||| |||||||||||||||  ||||| ||||||||||    
T  15059558 caaactccaagattccaagccaaccactaggccaaccccaaatgggtt 15059605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 24674434 - 24674383
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggttaact 71  Q
    |||||||||||||  |||||||||||||||  ||||| ||||||||||||||    
T  24674434 caaactccaagatcccaagccaaccactaggccaaccccaaatgggttaact 24674383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 47091731 - 47091684
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 67  Q
    ||||||||||||| ||||||||||||||||  ||||| ||||||||||    
T  47091731 caaactccaagatctcaagccaaccactaggccaaccccaaatgggtt 47091684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 7946885 - 7946836
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggttaa 69  Q
    |||||| |||||| |||||||||||||||| || ||| ||||||||||||    
T  7946885 caaacttcaagatctcaagccaaccactaggtcgaccccaaatgggttaa 7946836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 8077688 - 8077639
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggttaa 69  Q
    |||||||||||||  |||||||||||||||  ||||| ||||||||||||    
T  8077688 caaactccaagatcccaagccaaccactaggccaaccccaaatgggttaa 8077639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 52135180 - 52135127
Alignment:
Q  11 tgagatgaacaaactccaagatttcaagccaaccactagatcaaccacaaatgg 64  Q
    |||||||| |||||||||||||  |||| ||||||||||| ||||| |||||||    
T  52135180 tgagatgagcaaactccaagatcccaagtcaaccactagaccaaccccaaatgg 52135127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 1827686 - 1827735
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggttaa 69  Q
    ||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  1827686 caaactccaagatctcaagccaaccactaggtcaaccccaaatgggttaa 1827735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 27498887 - 27498936
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggttaa 69  Q
    |||||||||||||| ||||||||||||||| |||||| ||||||||||||    
T  27498887 caaactccaagattccaagccaaccactaggtcaaccccaaatgggttaa 27498936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 12317306 - 12317353
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 67  Q
    |||||||||||||| |||||||||||||||  ||||| ||||||||||    
T  12317306 caaactccaagattccaagccaaccactaggccaaccccaaatgggtt 12317353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 23270672 - 23270725
Alignment:
Q  14 gatgaacaaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 67  Q
    ||||| |||||||||||||  |||||||||||||||  ||||| ||||||||||    
T  23270672 gatgagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggtt 23270725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 42006840 - 42006791
Alignment:
Q  14 gatgaacaaactccaagatttcaagccaaccactagatcaaccacaaatg 63  Q
    ||||| ||||||||||||| ||||||||||||||||  ||||| ||||||    
T  42006840 gatgagcaaactccaagatctcaagccaaccactagcccaaccccaaatg 42006791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 11465063 - 11465111
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    ||||||||||||||||||||||| ||||||  |||||  ||||||||||    
T  11465063 caaactccaagatttcaagccaatcactaggccaacccgaaatgggtta 11465111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 13108605 - 13108653
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    |||||||||||||  |||||||||||||||  ||||| |||||||||||    
T  13108605 caaactccaagatcccaagccaaccactaggccaaccccaaatgggtta 13108653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 32059596 - 32059644
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    |||||||||||||  |||||||||||||||  ||||| |||||||||||    
T  32059596 caaactccaagatcccaagccaaccactaggccaaccccaaatgggtta 32059644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 1469166 - 1469114
Alignment:
Q  11 tgagatgaacaaactccaagatttcaagccaaccactagatcaaccacaaatg 63  Q
    |||||||||||||||||||||||||||| ||||||||||  ||||| ||||||    
T  1469166 tgagatgaacaaactccaagatttcaagtcaaccactaggccaaccccaaatg 1469114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 40332144 - 40332097
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 67  Q
    ||||||||||||||||||||||||||||||| ||||  ||||||||||    
T  40332144 caaactccaagatttcaagccaaccactagaccaactccaaatgggtt 40332097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 31197642 - 31197589
Alignment:
Q  14 gatgaacaaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 67  Q
    ||||| |||||||||||||  |||||||||||||||| ||||| ||||||||||    
T  31197642 gatgagcaaactccaagatcccaagccaaccactagaccaaccccaaatgggtt 31197589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 10091233 - 10091185
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    |||||||||||||  |||||||||||||||| ||||| |||||||||||    
T  10091233 caaactccaagatcccaagccaaccactagaccaaccccaaatgggtta 10091185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 11997894 - 11997847
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 67  Q
    |||||||||||||  |||||||||||||||  ||||||||||||||||    
T  11997894 caaactccaagatcccaagccaaccactagcccaaccacaaatgggtt 11997847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 28003881 - 28003838
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatg 63  Q
    |||||||||||||  |||||||||||||||||||||| ||||||    
T  28003881 caaactccaagatcccaagccaaccactagatcaaccccaaatg 28003838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 7799988 - 7800034
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggt 66  Q
    |||||||||||||  ||||||||||||||| |||||| |||||||||    
T  7799988 caaactccaagatcccaagccaaccactaggtcaaccccaaatgggt 7800034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 18044152 - 18044104
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    |||||||||||||  |||||||||||||||  ||||| |||||||||||    
T  18044152 caaactccaagatcccaagccaaccactaggccaaccccaaatgggtta 18044104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 28089861 - 28089817
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgg 64  Q
    ||||||||||||| ||||||||||||||||  ||||| |||||||    
T  28089861 caaactccaagatctcaagccaaccactaggccaaccccaaatgg 28089817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 39145808 - 39145856
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    |||||||||||||  |||| |||||||||| |||||| |||||||||||    
T  39145808 caaactccaagatcccaagtcaaccactaggtcaacctcaaatgggtta 39145856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 11007206 - 11007158
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    |||||||||||||  |||||||||||||||||||||| |||||||||||    
T  11007206 caaactccaagatcccaagccaaccactagatcaaccccaaatgggtta 11007158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 9208302 - 9208245
Alignment:
Q  11 tgagatgaacaaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    ||||| || |||||||||||||  ||| |||||||||||| ||||| |||||||||||    
T  9208302 tgagaggagcaaactccaagatcccaatccaaccactagaacaaccccaaatgggtta 9208245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 9843979 - 9843930
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggttaa 69  Q
    |||||||||||||  |||||||||||||||| ||||| ||||||| ||||    
T  9843979 caaactccaagatcccaagccaaccactagaccaaccccaaatggattaa 9843930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 34147387 - 34147338
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggttaa 69  Q
    |||||||||||||  |||||||||||||||  ||||| ||||||||||||    
T  34147387 caaactccaagatcccaagccaaccactaggccaaccccaaatgggttaa 34147338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 34160003 - 34159954
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggttaa 69  Q
    |||||||||||||  |||||||||||||||  ||||| ||||||||||||    
T  34160003 caaactccaagatcccaagccaaccactaggccaaccccaaatgggttaa 34159954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 22576108 - 22576060
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    |||||||||||||  |||||||||||||||  ||||| |||||||||||    
T  22576108 caaactccaagatcccaagccaaccactaggccaaccccaaatgggtta 22576060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 28672108 - 28672060
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    ||||||||||||| ||||| ||||||||||  ||||| |||||||||||    
T  28672108 caaactccaagatctcaagtcaaccactaggccaaccccaaatgggtta 28672060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 11941366 - 11941417
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggttaact 71  Q
    |||||||||||||  |||||||||||||||| ||||| ||||||||||||||    
T  11941366 caaactccaagatcccaagccaaccactagaccaaccccaaatgggttaact 11941417  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 8379416 - 8379472
Alignment:
Q  11 tgagatgaacaaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 67  Q
    ||||||||| | ||| ||||||||||||||||||||||  |||||| ||||||||||    
T  8379416 tgagatgaatagacttcaagatttcaagccaaccactaagtcaacctcaaatgggtt 8379472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 44946209 - 44946256
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 67  Q
    |||||||||||||  |||||||||||||||| ||||| ||||||||||    
T  44946209 caaactccaagatcccaagccaaccactagaccaaccccaaatgggtt 44946256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 4852599 - 4852551
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    |||||||||||||| |||| |||||||||| |||||| |||||| ||||    
T  4852599 caaactccaagattccaagtcaaccactaggtcaaccccaaatgagtta 4852551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 40940866 - 40940817
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggttaa 69  Q
    |||||||||||||  |||||||||||||||| ||||| ||||||||||||    
T  40940866 caaactccaagatcccaagccaaccactagaccaaccccaaatgggttaa 40940817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 25289870 - 25289917
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 67  Q
    |||||||||||||  |||||||||||||||| ||||| ||||||||||    
T  25289870 caaactccaagatcccaagccaaccactagaccaaccccaaatgggtt 25289917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 4462674 - 4462625
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggttaa 69  Q
    ||||||||||||| ||||||||||||||||  ||||| |||||| |||||    
T  4462674 caaactccaagatctcaagccaaccactaggccaaccccaaatgagttaa 4462625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 35492952 - 35492903
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggttaa 69  Q
    |||||||||||||  |||||||||||||||  ||||| ||||||||||||    
T  35492952 caaactccaagatcccaagccaaccactaggccaaccccaaatgggttaa 35492903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 4252555 - 4252599
Alignment:
Q  23 actccaagatttcaagccaaccactagatcaaccacaaatgggtt 67  Q
    |||||||||| ||||||||||||||||  ||||| ||||||||||    
T  4252555 actccaagatctcaagccaaccactaggccaaccccaaatgggtt 4252599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 27887466 - 27887426
Alignment:
Q  23 actccaagatttcaagccaaccactagatcaaccacaaatg 63  Q
    ||||||| || ||||||||||||||||||||||| ||||||    
T  27887466 actccaatatctcaagccaaccactagatcaaccccaaatg 27887426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 30807309 - 30807357
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    |||||||||||||  |||||||||||||||  ||||| |||||||||||    
T  30807309 caaactccaagatcccaagccaaccactaggccaaccccaaatgggtta 30807357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 46576389 - 46576341
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    |||||||||||||  |||||||||||||||  ||||| |||||||||||    
T  46576389 caaactccaagatcccaagccaaccactaggccaaccccaaatgggtta 46576341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 52983660 - 52983613
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 67  Q
    ||||||||||||| ||||||||||||||||  ||||| ||||||||||    
T  52983660 caaactccaagatctcaagccaaccactaggccaaccccaaatgggtt 52983613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 32942410 - 32942369
Alignment:
Q  21 aaactccaagatttcaagccaaccactagatcaaccacaaat 62  Q
    |||||||||||| ||||||||||||||||| ||||| |||||    
T  32942410 aaactccaagatctcaagccaaccactagaccaaccccaaat 32942369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 41621743 - 41621800
Alignment:
Q  11 tgagatgaacaaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    ||||| || ||||||||||||| |||||||||||| |||  ||||| |||||||||||    
T  41621743 tgagaggagcaaactccaagatctcaagccaaccattaggccaaccccaaatgggtta 41621800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 5609353 - 5609405
Alignment:
Q  15 atgaacaaactccaagatttcaagccaaccactagatcaaccacaaatgggtt 67  Q
    |||| |||||||||||||  |||||||||||||||  ||||| ||||||||||    
T  5609353 atgagcaaactccaagatcccaagccaaccactaggccaaccccaaatgggtt 5609405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 41085064 - 41085024
Alignment:
Q  23 actccaagatttcaagccaaccactagatcaaccacaaatg 63  Q
    |||||||||| ||||| ||||||||||||||||| ||||||    
T  41085064 actccaagatctcaagtcaaccactagatcaaccccaaatg 41085024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 8563 - 8611
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    |||||||||||||  |||||||||||||||  ||||| |||||||||||    
T  8563 caaactccaagatcccaagccaaccactaggccaaccccaaatgggtta 8611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 4718690 - 4718642
Alignment:
Q  20 caaactccaagatttcaagccaaccactagatcaaccacaaatgggtta 68  Q
    |||||||||||||  |||||||||||||||  ||||| |||||||||||    
T  4718690 caaactccaagatcccaagccaaccactaggccaaccccaaatgggtta 4718642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 21667591 - 21667551
Alignment:
Q  24 ctccaagatttcaagccaaccactagatcaaccacaaatgg 64  Q
    |||||||||| |||||||||||||||| ||||| |||||||    
T  21667591 ctccaagattccaagccaaccactagaccaacctcaaatgg 21667551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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