View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11305_low_12 (Length: 317)

Name: NF11305_low_12
Description: NF11305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11305_low_12
NF11305_low_12
[»] chr1 (5 HSPs)
chr1 (20-310)||(40689548-40689838)
chr1 (118-182)||(34710335-34710399)
chr1 (118-182)||(34713959-34714023)
chr1 (110-150)||(27509163-27509203)
chr1 (118-182)||(34406576-34406640)
[»] chr7 (2 HSPs)
chr7 (99-175)||(7687870-7687946)
chr7 (105-177)||(40243778-40243850)
[»] chr2 (2 HSPs)
chr2 (97-171)||(41234713-41234787)
chr2 (98-150)||(35505956-35506008)
[»] chr4 (1 HSPs)
chr4 (101-190)||(20926000-20926089)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 40689838 - 40689548
Alignment:
Q  20 gatttatgattgggtttgaattgaaactcttgatcatcatcatataagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689838 gatttatgattgggtttgaattgaaactcttgatcatcatcatataagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctc 40689739  T
Q  120 tatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689738 tatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttc 40689639  T
Q  220 catgaattttctactgctatattttgtgtagttcatcattccaccatctaaatcatcggtgttctttgttgatgattcctttgcttctcct 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  40689638 catgaattttctactgctatattttgtgtagttcatcattccaccatctaaatcatcagtgttctttgttgatgattcctttgcttgtcct 40689548  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 34710399 - 34710335
Alignment:
Q  118 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 182  Q
    ||||||||| ||||| |||||| |||||| ||||||| ||||||||||||||||| |||| ||||    
T  34710399 tctatggcctccaagtgcttgagatgaagtgaatgttttgttgcatgttttgcatgcatacacat 34710335  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 34714023 - 34713959
Alignment:
Q  118 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 182  Q
    ||||||||| ||||| ||||||||||||| ||| ||| | ||||||||||||||| |||| ||||    
T  34714023 tctatggcctccaagtgcttgaaatgaagtgaaagtttttttgcatgttttgcatgcatacacat 34713959  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 27509163 - 27509203
Alignment:
Q  110 tgacttgctctatggccaccaagggcttgaaatgaagggaa 150  Q
    |||||||||||||| |||||||| ||||| |||||||||||    
T  27509163 tgacttgctctatgtccaccaagtgcttggaatgaagggaa 27509203  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 34406576 - 34406640
Alignment:
Q  118 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 182  Q
    ||||||||| ||||| ||||||||||||| ||| | | |||| |||||||||||| |||| ||||    
T  34406576 tctatggcctccaagtgcttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacat 34406640  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 7687870 - 7687946
Alignment:
Q  99 ttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattca 175  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||  ||| || |||||||| ||||||    
T  7687870 ttggtttcttgtgacttgccctatgaccacctagggcttgaaatgaaggaaattgtctattacatgttttacattca 7687946  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 40243778 - 40243850
Alignment:
Q  105 tcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcata 177  Q
    ||||||| || || ||||||||||||||||||||||| || | |||| || ||||||| ||||||||||||||    
T  40243778 tcttgtggctagccctatggccaccaagggcttgaaaagatgagaattttttgttgcacgttttgcattcata 40243850  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 41234787 - 41234713
Alignment:
Q  97 ttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgca 171  Q
    ||||||| ||||||||||||||||||||||||| |  |||||||| |||| ||||  | ||||||||||||||||    
T  41234787 ttttggtctcttgtgacttgctctatggccacctaaagcttgaaaagaagagaattctttgttgcatgttttgca 41234713  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 35506008 - 35505956
Alignment:
Q  98 tttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaa 150  Q
    |||||||||||||||||||||||||| ||||| |  |||||||||||| ||||    
T  35506008 tttggtttcttgtgacttgctctatgtccacccaacgcttgaaatgaatggaa 35505956  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 20926000 - 20926089
Alignment:
Q  101 ggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaacca 190  Q
    ||||| ||||||||||| || || ||||| |  |||||||| ||||| || |||||||| ||||||||||||||||||| ||| ||||||    
T  20926000 ggttttttgtgacttgccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaacca 20926089  T

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