View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11305_low_13 (Length: 268)
Name: NF11305_low_13
Description: NF11305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11305_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 12150465 - 12150285
Alignment:
| Q |
18 |
acaccagaggtaataaggctatataatctctttttctatattatgtttcttcaaagttttatgcatatttttctccctattaaaatgtactatcaattat |
117 |
Q |
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| T |
12150465 |
acacctgaggtaataaggcaatataatctctttttctatattatttttcttcaaagttttatgcatatttttctccctattaaaatgtactatcaattat |
12150366 |
T |
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| Q |
118 |
tggttgcagagaaatgatgatcaaagttacaatgaagaggaggagactggtggatggaaagaatcagctagtgacttttga |
198 |
Q |
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| T |
12150365 |
tggttgcagagaaatgatgatcagagttacaatgaagaggaggagactggtggatggaaagaatcagctagtgacttttga |
12150285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 12143480 - 12143302
Alignment:
| Q |
18 |
acaccagaggtaataaggctatataatctctttttctatattatgtttcttcaaagttttatgcatatttttctccctattaaaatgtactatcaattat |
117 |
Q |
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| T |
12143480 |
acacctgaggtaataaggctatttaatctctttttctat--tatttttcttcataattttatgcatatttttctccctattaaaatgtactatcaattat |
12143383 |
T |
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| Q |
118 |
tggttgcagagaaatgatgatcaaagttacaatgaagaggaggagactggtggatggaaagaatcagctagtgacttttga |
198 |
Q |
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| T |
12143382 |
tggttgcagagaaactacgaacggagttacaatcaagaggaggagaccggaggatggaaacaatcggctagggacttttga |
12143302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 193 - 257
Target Start/End: Complemental strand, 12150199 - 12150135
Alignment:
| Q |
193 |
ttttgagaacatttaggaactttaatcattgtgttttctggtgtgatgatatcatagtgttctgt |
257 |
Q |
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| T |
12150199 |
ttttgagaacatttaggaactttaatcattgtgttttctggtgtgatgatatcatagtgttctgt |
12150135 |
T |
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