View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11305_low_15 (Length: 257)
Name: NF11305_low_15
Description: NF11305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11305_low_15 |
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| [»] scaffold0061 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 752026 - 752272
Alignment:
| Q |
1 |
tcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtg |
100 |
Q |
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| T |
752026 |
tcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcccg |
752125 |
T |
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| Q |
101 |
caaaacaacatgtctcaagcacacatttatcctccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctc |
200 |
Q |
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| T |
752126 |
caaaacaacatgtctcaagcacacatttatccaccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctc |
752225 |
T |
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| Q |
201 |
aaccctctcatatggtttcaactgcacaaagctctcaaccttctcct |
247 |
Q |
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| T |
752226 |
aaccctctcatatggtttcaactgcacaaagctctcaaccttctcct |
752272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 234
Target Start/End: Complemental strand, 7327338 - 7327174
Alignment:
| Q |
70 |
ctcaaatccaagtagctacttcaatctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgatgaatatcaatgataaaaaccctttaggg |
169 |
Q |
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| T |
7327338 |
ctcaaagccaagtagctacttcaatctcatgcaaaacaacatgtttgaagcaaaaattcatcctccattgatgaatattaatgataaaaccccattaggg |
7327239 |
T |
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| Q |
170 |
ttttggccacttatatcaggacaaagctctcaaccctctcatatggtttcaactgcacaaagctc |
234 |
Q |
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| T |
7327238 |
ttttggcaacttcaactcggacaaagctctcaaccttcttctatgatttccaatgcgcaaagctc |
7327174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 42 - 234
Target Start/End: Original strand, 746137 - 746329
Alignment:
| Q |
42 |
ataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaacaacatgtctcaagcacacatttatcctccattgat |
141 |
Q |
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| T |
746137 |
ataaccttattagttctccttacttgacctcaaattcaggtaccaacttcaatctcatgcataccaacatatctcaagttaaaatttactctccattgat |
746236 |
T |
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| Q |
142 |
gaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctcaaccctctcatatggtttcaactgcacaaagctc |
234 |
Q |
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| T |
746237 |
gaatatttgtgataaaaatcccttagggttttggccaattcgattgggacaaagctctcaacattctcttatggtttccagtgcacaaagctc |
746329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 51792497 - 51792294
Alignment:
| Q |
1 |
tcttaggggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtg |
100 |
Q |
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||||| ||||||| ||||||||| |||| || ||||| | ||||| |||| ||| |||||| |||| | ||||||||||| ||||||||||||| || |
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| T |
51792497 |
tcttaagggaaaaacaatagctcatgaatcacacaaggtagataaacttatcagtactccttccttgaccccaaatccaagttactacttcaatctcatg |
51792398 |
T |
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| Q |
101 |
caaaacaacatgtctcaagcacacatttatcctccattgatgaatatcaatgataaaaaccctttagggttttggccacttatatcaggacaaagctctc |
200 |
Q |
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| T |
51792397 |
caaaattccatgtctcaagcacaaacttatcctccaatgatgaatattagtgataaaaaccccttagggttttggccacttcaatcgggacaaagctctc |
51792298 |
T |
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| Q |
201 |
aacc |
204 |
Q |
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|||| |
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| T |
51792297 |
aacc |
51792294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 2399 - 2262
Alignment:
| Q |
7 |
gggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaac |
106 |
Q |
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||||||| ||||||||| |||| || ||||| ||||||| |||| |||| |||| |||||| |||||||||||||| | ||||||| || ||||| |
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| T |
2399 |
gggaaaagcaatagctcatgaatcacacaaggttgataaacttattagtattcctcacttggcctcaaatccaagtaattgcttcaatttcatgcaa--- |
2303 |
T |
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| Q |
107 |
aacatgtctcaagcacacatttatcctccattgatgaatat |
147 |
Q |
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| T |
2302 |
aacatgtctcaagcagaaatttaacctccattgattaatat |
2262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 147
Target Start/End: Complemental strand, 7910 - 7773
Alignment:
| Q |
7 |
gggaaaatcaatagctcttgaaacaaacaagattgataaccttaatagttctccttacttggactcaaatccaagtagctacttcaatctcgtgcaaaac |
106 |
Q |
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||||||| ||||||||| |||| || ||||| ||||||| |||| |||| |||| |||||| |||||||||||||| | ||||||| || ||||| |
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| T |
7910 |
gggaaaagcaatagctcatgaatcacacaaggttgataaacttattagtattcctcacttggcctcaaatccaagtaattgcttcaatttcatgcaa--- |
7814 |
T |
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| Q |
107 |
aacatgtctcaagcacacatttatcctccattgatgaatat |
147 |
Q |
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| T |
7813 |
aacatgtctcaagcagaaatttaacctccattgattaatat |
7773 |
T |
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