View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11305_low_16 (Length: 256)

Name: NF11305_low_16
Description: NF11305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11305_low_16
NF11305_low_16
[»] chr4 (7 HSPs)
chr4 (1-153)||(8563865-8564017)
chr4 (148-245)||(8563690-8563787)
chr4 (74-151)||(8632721-8632798)
chr4 (148-195)||(2928864-2928911)
chr4 (148-195)||(12753708-12753755)
chr4 (148-191)||(22746632-22746675)
chr4 (154-197)||(12746568-12746612)
[»] chr6 (2 HSPs)
chr6 (148-243)||(25398210-25398305)
chr6 (148-217)||(25393891-25393960)
[»] chr5 (3 HSPs)
chr5 (148-217)||(18079961-18080030)
chr5 (148-243)||(29742114-29742208)
chr5 (151-212)||(31109010-31109071)
[»] chr2 (3 HSPs)
chr2 (148-243)||(26195424-26195519)
chr2 (151-195)||(17319046-17319090)
chr2 (157-243)||(7384782-7384868)
[»] chr8 (3 HSPs)
chr8 (148-217)||(23429679-23429748)
chr8 (148-195)||(36911975-36912022)
chr8 (148-194)||(15007143-15007189)
[»] chr7 (4 HSPs)
chr7 (148-217)||(42937577-42937646)
chr7 (148-212)||(42939877-42939941)
chr7 (148-212)||(20125311-20125375)
chr7 (148-248)||(34326408-34326508)
[»] chr1 (3 HSPs)
chr1 (148-233)||(15552963-15553048)
chr1 (151-240)||(3850378-3850467)
chr1 (148-195)||(145402-145449)
[»] chr3 (1 HSPs)
chr3 (148-239)||(15636260-15636351)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 8564017 - 8563865
Alignment:
Q  1 tcccatgtgttttgttcgctagcagacaaacactacatcaaagactcattttctgttttggtttcgaagttagctctacctctaccaaatacacgataca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8564017 tcccatgtgttttgttcgctagcagacaaacactacatcaaagactcattttctgttttggtttcgaagttagctctacctctaccaaatacacgataca 8563918  T
Q  101 cattttattttggcattttcttcattaaaaagttgtgttcaacctagatatgt 153  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8563917 cattttattttggcattttcttcattaaaaagtggtgttcaacctagatatgt 8563865  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 8563787 - 8563690
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttattcctttctctgt 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  8563787 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctataatattctctctttattcctttctctgt 8563690  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 8632798 - 8632721
Alignment:
Q  74 ctctacctctaccaaatacacgatacacattttattttggcattttcttcattaaaaagttgtgttcaacctagatat 151  Q
    |||| ||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||| | |||||||||||||||    
T  8632798 ctctccctctaccaaacacatgatacacatttcattttggaattttcttcattaaaaagtggcgttcaacctagatat 8632721  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 2928911 - 2928864
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacactt 195  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  2928911 atatgtgtcctataaataggacctacattacaatgtaatgacacactt 2928864  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 12753755 - 12753708
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacactt 195  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||||||    
T  12753755 atatgtgtcttataaataggacctacattacaatgtaatgacacactt 12753708  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 191
Target Start/End: Original strand, 22746632 - 22746675
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacac 191  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  22746632 atatgtgtcctataaataggacctacattacaatgtaatgacac 22746675  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 197
Target Start/End: Complemental strand, 12746612 - 12746568
Alignment:
Q  154 gtcctataaatagaacctatattacaatgt-aatgacacacttat 197  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  12746612 gtcctataaatagaacctatattataatgtgaatgacacacttat 12746568  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 25398210 - 25398305
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttattcctttctct 243  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||| ||||| ||||  | ||||| |||||| | |||||||    
T  25398210 atatgtgtcctataaataggacctacattacaatgtaatgacacacttgtgaagtaatacaatatactctcttgttctccctttatccttttctct 25398305  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 25393891 - 25393960
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctct 217  Q
    ||||||||||||||||||| | ||| |||||||||| ||||||||||| | || ||||| ||||| ||||    
T  25393891 atatgtgtcctataaataggatctacattacaatgtgatgacacacttgtgaactaatacaatatactct 25393960  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 18080030 - 18079961
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctct 217  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||||| ||||| ||||    
T  18080030 atatgtgtcctataaataggacctacattacaatgtaatgacacacttgtgaagtaatacaatatactct 18079961  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 29742208 - 29742114
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttattcctttctct 243  Q
    ||||||||| ||||||||| ||||| |||| ||||||||||||||||| | |||||||| ||||| ||||  | ||||| ||||| ||||||||||    
T  29742208 atatgtgtcatataaataggacctacattaaaatgtaatgacacacttgtgaagtaatacaatatactcttttgttctcccttta-tcctttctct 29742114  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 212
Target Start/End: Complemental strand, 31109071 - 31109010
Alignment:
Q  151 tgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatat 212  Q
    |||||| ||||||||| | ||||||| |||||||||||||||||| | |||||||| |||||    
T  31109071 tgtgtcatataaataggatctatattgcaatgtaatgacacacttgtgaagtaatataatat 31109010  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 148 - 243
Target Start/End: Original strand, 26195424 - 26195519
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttattcctttctct 243  Q
    ||||||||||||||||||| ||||||||| |||||||||  ||||||||| |||||||| ||||| ||||  | ||||| |||||| | |||||||    
T  26195424 atatgtgtcctataaataggacctatattgcaatgtaatatcacacttatgaagtaatacaatatactctcttgttctccctttatccttttctct 26195519  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 17319090 - 17319046
Alignment:
Q  151 tgtgtcctataaatagaacctatattacaatgtaatgacacactt 195  Q
    |||||||||||||||||||||||| | |||||||| |||||||||    
T  17319090 tgtgtcctataaatagaacctataatgcaatgtaaagacacactt 17319046  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 7384868 - 7384782
Alignment:
Q  157 ctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttattcctttctct 243  Q
    |||||||||| ||||| ||||| || ||| |||| ||||   ||| |||| ||||| |||| |||||||||||||||| ||||||||    
T  7384868 ctataaataggacctacattaccatataaagacatacttgagaagcaatacaatatactcttatattctctctttatttctttctct 7384782  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 23429679 - 23429748
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctct 217  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| | |||||| | ||||| ||||    
T  23429679 atatgtgtcctataaataggacctacattacaatgtaatgacacacttgtgaagtaaaacaatatactct 23429748  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 36912022 - 36911975
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacactt 195  Q
    |||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  36912022 atatgtatcctataaataggacctacattacaatgtaatgacacactt 36911975  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 15007143 - 15007189
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacact 194  Q
    ||||||||||||||||| | ||||| |||||||||||| ||||||||    
T  15007143 atatgtgtcctataaatgggacctacattacaatgtaaagacacact 15007189  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 42937577 - 42937646
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctct 217  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| | |||||||| ||||| ||||    
T  42937577 atatgtgtcctataaataggaccaacattacaatgtaatgacacacttttgaagtaatacaatatactct 42937646  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 42939877 - 42939941
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatat 212  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||||| | |||||||| |||||    
T  42939877 atatgtgtcctataaataagacctacattacaatgtaatgacacacttgtgaagtaatacaatat 42939941  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 20125311 - 20125375
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatat 212  Q
    |||||| |||||||||||| || |||||| |||||||||||||||||| | |||||||| |||||    
T  20125311 atatgtatcctataaataggacatatattgcaatgtaatgacacacttgtgaagtaatacaatat 20125375  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 34326408 - 34326508
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttattcctttctctgtgc 247  Q
    ||||| ||||||||||||  ||||| |||||||||||| |||||| || | |||||||  ||||| ||||  ||||||| | ||||  |||||||| |||    
T  34326408 atatgcgtcctataaataagacctacattacaatgtaaagacacatttgtgaagtaatgcaatatactcttctattctccccttatctctttctctttgc 34326507  T
Q  248 t 248  Q
    |    
T  34326508 t 34326508  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 15552963 - 15553048
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttat 233  Q
    |||||| |||||||||||| ||||||||| |||||||||||||||||| | |||||||| ||||| || |  ||||||| ||||||    
T  15552963 atatgtatcctataaataggacctatattgcaatgtaatgacacacttgtgaagtaatacaatatactatcttattctccctttat 15553048  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 3850467 - 3850378
Alignment:
Q  151 tgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttattcctttc 240  Q
    |||||||||||||||||| ||||||| |||| ||| ||||||||||| |||||||  ||||| ||||  | ||||| | |||||||||||    
T  3850467 tgtgtcctataaatagaatctatattgcaatataaagacacacttatgaagtaatgcaatatactctcttcttctcccgttattcctttc 3850378  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 145449 - 145402
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacactt 195  Q
    ||||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  145449 atatgcgtcctataaataggacctacattacaatgtaatgacacactt 145402  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 15636351 - 15636260
Alignment:
Q  148 atatgtgtcctataaatagaacctatattacaatgtaatgacacacttattaagtaataaaatatgctctgatattctctctttattccttt 239  Q
    |||| |||| ||||||||| || || |||||||| ||||||||||||| | |||||||  ||||| |||| || ||||||||||||| ||||    
T  15636351 atatatgtcttataaataggacatacattacaatctaatgacacacttgtaaagtaatgcaatatactctcatgttctctctttatttcttt 15636260  T

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