View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11305_low_17 (Length: 223)
Name: NF11305_low_17
Description: NF11305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11305_low_17 |
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| [»] scaffold0061 (2 HSPs) |
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| [»] scaffold0017 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 751886 - 751691
Alignment:
| Q |
11 |
tgcgcacgttggaaatctcaaattcaacttttttcatcctttctttaaaatattcttgaacattataggtcttaagacgcctatcaattgttgtgttata |
110 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
751886 |
tgcgcactttggaaatctcaaattcaacttttttcatcctttctttaaaatattcttgaacattataggtcttaagacgcctatcaattgttgtgttata |
751787 |
T |
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| Q |
111 |
gtacctttgaagaattctttgcacatcttttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagcataaagaat |
206 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
751786 |
gtacctttgaagaattctttgcaactcttttgtgtctttaggccatgtttcaggttcatcatacccttggccttcaaagttgggagcataaagaat |
751691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 745981 - 745797
Alignment:
| Q |
13 |
cgcacgttggaaatctcaaattcaacttttttcatcctttctttaaaatattcttgaacattataggtcttaagacgcctatcaattgttgtgttatagt |
112 |
Q |
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||||| ||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| | ||||| |
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| T |
745981 |
cgcactttgtaaatctccaattcaacttttttcatcctttccttaaaatattcttgaacatcataggtcttaggacgcctatcaattgttgtctcatagt |
745882 |
T |
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| Q |
113 |
acctttgaagaattctttgcacatcttttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagc |
197 |
Q |
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| T |
745881 |
acttttgaagaactctttgtacctctcttttgtctttaggccatgtttcaggttcaatatatccttggccttcaaggttaggagc |
745797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 7327547 - 7327743
Alignment:
| Q |
11 |
tgcgcacgttggaaatctcaaattcaacttttttcatcctttctttaaaatattcttgaacattataggtcttaagacgcctatcaattgttgtgttata |
110 |
Q |
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||||||| |||||||||||||||| || ||||||||||||||| |||||||| |||||||||| |||| ||||| ||||||| ||| ||||||| ||||| |
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| T |
7327547 |
tgcgcactttggaaatctcaaatttaatttttttcatcctttccttaaaatactcttgaacatcatagatcttaggacgcctgtcacttgttgtattata |
7327646 |
T |
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| Q |
111 |
gtacctttgaagaattctttgcacatcttttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagcataaagaatt |
207 |
Q |
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|||| ||||||| ||||||||||| ||| || |||||||||||||||||||||||||| | | || ||| |||||||||| |||||||| |||||| |
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| T |
7327647 |
gtacttttgaaggattctttgcacctctcttttgtctttaggccatgtttcaggttcaacgaatccttgggcttcaaagttaggagcatagagaatt |
7327743 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 51792639 - 51792831
Alignment:
| Q |
13 |
cgcacgttggaaatctcaaattcaacttttttcatcctttctttaaaatattcttgaacattataggtcttaagacgcctatcaattgttgtgttatagt |
112 |
Q |
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||||| |||| |||||| ||||||| |||| | || ||||| |||||||| |||||||||| |||| ||||| ||||||||||| ||||||||||||||| |
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| T |
51792639 |
cgcactttggtaatctcgaattcaagttttctaattctttccttaaaatactcttgaacatcatagatcttaggacgcctatcacttgttgtgttatagt |
51792738 |
T |
|
| Q |
113 |
acctttgaagaattctttgcacatcttttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagcataaagaa |
205 |
Q |
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|| ||||||| ||||||| || || || |||| ||||||||||||||||||||| || | || | ||| |||| ||||||||||| |||| |
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| T |
51792739 |
acttttgaaggattctttctaccgctcttttgtccttaggccatgtttcaggttcagcaaatcctcgacctacaaaattgggagcatagagaa |
51792831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 2556 - 2611
Alignment:
| Q |
20 |
tggaaatctcaaattcaacttttttcatcctttctttaaaatattcttgaacatta |
75 |
Q |
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||||||||| |||||||||||||| |||| |||| ||||| || |||||||||||| |
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| T |
2556 |
tggaaatcttaaattcaactttttccatcttttccttaaattactcttgaacatta |
2611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 8067 - 8122
Alignment:
| Q |
20 |
tggaaatctcaaattcaacttttttcatcctttctttaaaatattcttgaacatta |
75 |
Q |
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||||||||| |||||||||||||| |||| |||| ||||| || |||||||||||| |
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| T |
8067 |
tggaaatcttaaattcaactttttccatcttttccttaaattactcttgaacatta |
8122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 129567 - 129622
Alignment:
| Q |
20 |
tggaaatctcaaattcaacttttttcatcctttctttaaaatattcttgaacatta |
75 |
Q |
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||||||||| |||||||||||||| |||||||| ||| |||||||||||| |||| |
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| T |
129567 |
tggaaatcttaaattcaactttttccatccttttcttataatattcttgaatatta |
129622 |
T |
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