View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11305_low_18 (Length: 212)
Name: NF11305_low_18
Description: NF11305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11305_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 8564441 - 8564522
Alignment:
| Q |
116 |
gattacactatataaagctggtgtttcattgtaaatttataatacttacattttctgaataatgaaattccttgttcacact |
197 |
Q |
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| T |
8564441 |
gattacactatataaagctggtgtttcattgtaaatttataatacttacattttctgaataatgaaattccttgttcacact |
8564522 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 8564326 - 8564380
Alignment:
| Q |
1 |
ttacttgtgtagcaagtaactgtagaacataactagcttaatcgttgtaacataa |
55 |
Q |
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| T |
8564326 |
ttacttgtgtagcaagtaactgtagaacataactagcttaatcgttgtaacataa |
8564380 |
T |
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