View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11305_low_2 (Length: 667)
Name: NF11305_low_2
Description: NF11305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11305_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 63 - 651
Target Start/End: Original strand, 43981128 - 43981732
Alignment:
| Q |
63 |
ttaacacacaataatggaaaacgtaacaaactcataaacaagattttaacgttcgctcatttttct----------------agagatggcgacgccatt |
146 |
Q |
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| T |
43981128 |
ttaacacacaataatggaaaacgtaacaaactcataaacaagattttaacgttcgctcatttttctcttcaaataatcttctagagatggcgacgccatt |
43981227 |
T |
|
| Q |
147 |
ggacggaggaggaggagtggcgttgctctcgaactccgccgcgaacaaagtcgattcctcttcgactatcaatggcggtttgaagtgttccaaactcgat |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43981228 |
ggacggaggaggaggagtggcgttgctctcgaactccgccgcgaacaaagtcgattcctcttcgactatcaatggcggtttgaagtgttccaaactcgat |
43981327 |
T |
|
| Q |
247 |
tcaccgattttgattttcttgttctttcataaagcgattcggaatgagcttgacgttttacatcgattagccatgtcattcgccaccggtaatcgctctg |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43981328 |
tcaccgattttgattttcttgttctttcataaagcgattcggaatgagcttgacgttttacatcgattagccatgtcattcgccaccggtaatcgctctg |
43981427 |
T |
|
| Q |
347 |
atattcgtcctctcttcgaccgttatcatttcctcaactctatttatcgtcatcactccaatgctgaagatgaggttcaaatctcgctttaactttttac |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43981428 |
atattcgtcctctcttcgaccgttatcatttcctcaactctatttatcgtcatcactccaatgctgaagatgaggttcaaatctcgctttaactttttac |
43981527 |
T |
|
| Q |
447 |
gtttatcttccattttctagccttttcattcttcaactgtatgatgaacattttcattctcgaaattaacttaagattttgttactctatttaggtctaa |
546 |
Q |
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| T |
43981528 |
gtttatcttccattttctagccttttcattcttcaactgtatgatgaacattttcattctcgaaattaacttaagattttgttactctatttaggtctaa |
43981627 |
T |
|
| Q |
547 |
gtaactttagcgaagatatttcgattttttctacatgtacagaatcaattgatttgcatgatatgcatctttgttaattttgtttaatttaatcgtatgt |
646 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43981628 |
gtaactttagcgaagatatttcgattttttctacatgtacagaatcaattgatttgcatgatatgcatctttgttaattttgtttaatttaatcgtatgt |
43981727 |
T |
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| Q |
647 |
tacta |
651 |
Q |
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||||| |
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| T |
43981728 |
tacta |
43981732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 31305004 - 31305068
Alignment:
| Q |
253 |
attttgattttcttgttctttcataaagcgattcggaatgagcttgacgttttacatcgattagc |
317 |
Q |
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| T |
31305004 |
attttgattttctcgttctttcaaaaagcgattgggaatgagcttgatgcgttgcatcgattagc |
31305068 |
T |
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