View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11305_low_7 (Length: 404)
Name: NF11305_low_7
Description: NF11305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11305_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 41 - 388
Target Start/End: Original strand, 5540913 - 5541258
Alignment:
| Q |
41 |
aattaatgtcagatggttacaagtacttacaattgtaggtggaaaagttttgaacctaatttacactatacaattttaaaattagaaaggatgacctgaa |
140 |
Q |
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| T |
5540913 |
aattaatgtcagatggttacaagtacttacaattgtaggtggaaaagttttgaacctaatttacactatacaattttaaaattagaaaggttgacttgaa |
5541012 |
T |
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| Q |
141 |
tgcattgtctactcaaaatatcgacgaatatttttaannnnnnnnnnnncgtgaggaatcaatatcaatataataaattaagagagaataaatttcaagg |
240 |
Q |
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| T |
5541013 |
tgcattgtctactcaaagtatcgacgaatatttttaatttttttttt--cgtgaggaatcaatatcaatataataaattaagagagaataaatttcaggg |
5541110 |
T |
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| Q |
241 |
tttggtatattgataaataacgcaggtcttggattcatataagtttcaagttttaactcctctaaataatgttattggaggggataattgaaattctcca |
340 |
Q |
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| T |
5541111 |
tttggtataatgataaataacgcaggtcttggattcatataagtttcaagttttaactcctctaaataatgttattggaggggataattgaaattctcca |
5541210 |
T |
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| Q |
341 |
atgttccgagttttaggtctttattaccttaaaatcgaacaccatttt |
388 |
Q |
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|||||| || ||||||||||||||||||||||||| |||||||||||| |
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| T |
5541211 |
atgttcagaattttaggtctttattaccttaaaattgaacaccatttt |
5541258 |
T |
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