View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11305_low_9 (Length: 400)
Name: NF11305_low_9
Description: NF11305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11305_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 113 - 389
Target Start/End: Original strand, 37173170 - 37173446
Alignment:
| Q |
113 |
agaaatgggtgagtgtgggtcaaaaagaggtcagaaagattggaggtttggaaagagactaaaagagtacagaggtagattttatataatgagaagatgc |
212 |
Q |
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| T |
37173170 |
agaaatgggtgagtgtgggtcaaaaagaggtcagaaagattggaggtttggaaagagactaaaagagtacagaggtagattttatataatgagaagatgc |
37173269 |
T |
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| Q |
213 |
ctagtcatgttactctgctggcacaagtatggatgatcacttacacttgtttgtttctttatcatcttcactgattaatttgaagaaaaatttgtgtagt |
312 |
Q |
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| T |
37173270 |
ctagtcatgttactctgctggcacaagtatggatgatcacttacacttgtttgtttctttatcatcttcactgattaatttgaagaaaagtttgtgtagt |
37173369 |
T |
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| Q |
313 |
gtggtcattctctcacatgtagctattgtcacccattatcatatcatatgtatatgttactattatgtattcatctc |
389 |
Q |
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| T |
37173370 |
gtggtcattctctcacatgtagctattgtcacccagtatcatatcatatgtgtatgttactattatgtattcatctc |
37173446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 37173043 - 37173135
Alignment:
| Q |
19 |
caacatcctttaacttctctctatatataaaacctgcaggacgtagcaaatatatctcacgaactagctaggttacatacaaacgtaacagat |
111 |
Q |
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| T |
37173043 |
caacatcctctaatttctctccatatataaaacctgcaggacgtagcaaatatatctcacgaactagctaggttacatataaacgtaagagat |
37173135 |
T |
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