View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11306_high_10 (Length: 243)
Name: NF11306_high_10
Description: NF11306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11306_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 40671885 - 40672022
Alignment:
| Q |
1 |
ttttttatggaagtcctctatttttgtcaagatgtttgcccaacattattcaaccactcctcccatatccgagatagcacactcgacttgcaaattaatc |
100 |
Q |
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| T |
40671885 |
ttttttatggaagtcctctattgttgtcaagatgtttgcccaacattattcacccactccccccatatccgagatagcacactcgacttgcaaattaatc |
40671984 |
T |
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| Q |
101 |
aacacttatctaggaaagaccaaattaaccggatgcctccac |
142 |
Q |
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| T |
40671985 |
aacacttatctaggaaagacca----aaccggatgcctccac |
40672022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 40672085 - 40672181
Alignment:
| Q |
138 |
tccacacaaacatttccaccacgagattgataaatttggattgatcaaaatataaaatatccgaaccatacatagcactcaacattttgacctttgc |
234 |
Q |
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| T |
40672085 |
tccacacaaacatttccaccacgagattgataaatttggattgatcaaaatataaaatatccgaaccattcatagcactcaacattttgaccattgc |
40672181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 40665379 - 40665476
Alignment:
| Q |
137 |
ctccacacaaacatttccaccacgagattgataaatttggattgatcaaaatataaaatatccgaaccatacatagcactcaacattttgacctttgc |
234 |
Q |
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| T |
40665379 |
ctccacacaaacattcccaccacaagattgacaaattcggattgatcaaaatataaaatatccgaaccatacatagcactcaacattttgaccattgc |
40665476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 40664542 - 40664583
Alignment:
| Q |
38 |
gcccaacattattcaaccactcctcccatatccgagatagca |
79 |
Q |
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| T |
40664542 |
gcccaacattattcacccactccccccatatccgagatagca |
40664583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 190
Target Start/End: Original strand, 40682397 - 40682450
Alignment:
| Q |
137 |
ctccacacaaacatttccaccacgagattgataaatttggattgatcaaaatat |
190 |
Q |
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||||||| |||| ||||| |||| ||||||||||||| |||||||||||||||| |
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| T |
40682397 |
ctccacataaacctttcccccacaagattgataaattcggattgatcaaaatat |
40682450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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