View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11306_high_4 (Length: 335)
Name: NF11306_high_4
Description: NF11306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11306_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 120 - 306
Target Start/End: Original strand, 17461155 - 17461339
Alignment:
| Q |
120 |
tatcttaatacatgtctttgacaaactagttgaagactaatatcattacaacaatagcattaatggtaaaatagtagcaaataaagcatacagattaatt |
219 |
Q |
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| T |
17461155 |
tatcttaatacatgtctttgacaaactagttgaatactaatatcattacgacaacagcattaatggtaaaatagtagcaaataaagcatactgattaatt |
17461254 |
T |
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| Q |
220 |
atagatgttatccctttctgagaatccaaaatcatatatgctatactatttcagtagaatttctgatgagggttaaaacatcaaatt |
306 |
Q |
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| T |
17461255 |
atagatgttatccctttctgagagtccataatcatatatgc--tactatttcagtagaatttctgatgagggttaaaacatcaaatt |
17461339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 17455801 - 17455746
Alignment:
| Q |
24 |
agataggtactatattatccgtctttatactcaccgtaaaaatgacttgtatataa |
79 |
Q |
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| T |
17455801 |
agataggtactatattatttgtctttatactcaccgtaaaaatgacttgtatataa |
17455746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 80 - 306
Target Start/End: Complemental strand, 775177 - 774964
Alignment:
| Q |
80 |
ccaaacttattagtctcatttaagt-aacttgaatatggtctatcttaatacatgtctttgacaaactagttgaagactaatatcattacaacaatagca |
178 |
Q |
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| T |
775177 |
ccaaacttattagtctcattttagttaacttaaatatggtctgtcttgatacatttcattgacaaactagtagaatattaatatcatta----------- |
775089 |
T |
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| Q |
179 |
ttaatggtaaaatagtagcaaataaagcatacagattaattatagatgttatccctttctgagaatcca--aaatcatatatgctatactatttcagtag |
276 |
Q |
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| T |
775088 |
---atggtaaaatagtagcaaagaaaacatattgattaattattgatgttacccctccctgagagtccataaaatcatatctgcta--ctatttcaatag |
774994 |
T |
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| Q |
277 |
aatttctgatgagggttaaaacatcaaatt |
306 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
774993 |
aatttctgatgagggttaaaacatcaaatt |
774964 |
T |
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