View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11306_high_6 (Length: 271)
Name: NF11306_high_6
Description: NF11306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11306_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 43107033 - 43107289
Alignment:
| Q |
17 |
agtcagatattcattcctccatatgacaaaaataacaactaacattgatatttgaaagaagaaaaacacacacaattgaaatagaataaagtaggtggaa |
116 |
Q |
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| T |
43107033 |
agtcagatattcattcctccatataacaaaaataacaactaacattgatatttgaaagaagaaaaacgcacacaattgaaatagaataaagtaggtggaa |
43107132 |
T |
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| Q |
117 |
aaacctctagnnnnnnn-agtaataggaaacaaaaaaccctagtcacaagaagttacacatataatataataacataaaa-aatactagtttgattcatc |
214 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
43107133 |
aaacctctagttttttttagtaataggaaacaaaaaaccctagtcacaagaagttacacatataacataataacataaaaaaatactagtttgattcatc |
43107232 |
T |
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| Q |
215 |
acgtacatcatttagtccaataagacattatcttttgatgttgaatatgaattcatc |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43107233 |
acgtacatcatttagtccaataagacattatcttttgatgttgaatatggattcatc |
43107289 |
T |
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