View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11306_low_1 (Length: 449)
Name: NF11306_low_1
Description: NF11306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11306_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 254 - 436
Target Start/End: Complemental strand, 6259760 - 6259578
Alignment:
| Q |
254 |
tattagcccctacttgttccaacgtgtgaacttgtttcttcaaaaacttcacataatgtatagcttcatctaacattgaagcagtgtccattttggttcc |
353 |
Q |
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| T |
6259760 |
tatttgccccaacttgttccaacgtttgaacttgtttcttcaaaaacttcacataatgtattgcttcatctaacatagaagcagtgtccatttttgttcc |
6259661 |
T |
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| Q |
354 |
accaggtactagtctttgcaatatccttatcctttcacttatcctttctcttctatgcctagcagctacactttgtggatcct |
436 |
Q |
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| T |
6259660 |
accaggtactaatctttgtaatatccttattctttcactaattctttctcttctatgtcttgctgctacactttgtggatcct |
6259578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 6259884 - 6259841
Alignment:
| Q |
106 |
ctaagcaattgtttggaagtggaacccaccatttgaaaaggttg |
149 |
Q |
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| T |
6259884 |
ctaagcatttgtttggaagtgggacccaccatttgacaaggttg |
6259841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 315 - 434
Target Start/End: Original strand, 5040671 - 5040790
Alignment:
| Q |
315 |
agcttcatctaacattgaagcagtgtccattttggttccaccaggtactagtctttgcaatatccttatcctttcacttatcctttctcttctatgccta |
414 |
Q |
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| T |
5040671 |
agcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatcttttgcaaaaccctaattctttcacttattctttctcttctatgcctt |
5040770 |
T |
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| Q |
415 |
gcagctacactttgtggatc |
434 |
Q |
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| T |
5040771 |
gcagcaacagtttgaggatc |
5040790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 434
Target Start/End: Complemental strand, 39073635 - 39073486
Alignment:
| Q |
285 |
ttgtttcttcaaaaacttcacataatgtatagcttcatctaacattgaagcagtgtccattttggttccaccaggtactagtctttgcaatatccttatc |
384 |
Q |
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| T |
39073635 |
ttgtctcttcaaaaacttaacataacgaatggcttcatcaagcatagaagctgtatccattttagttccaccaggaacaagtctttgaaggatacgaatc |
39073536 |
T |
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| Q |
385 |
ctttcacttatcctttctcttctatgcctagcagctacactttgtggatc |
434 |
Q |
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| T |
39073535 |
ttctcactgattctttctcttctatgtctagctgcaacactttgtggatc |
39073486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 434
Target Start/End: Complemental strand, 46899443 - 46899306
Alignment:
| Q |
297 |
aaacttcacataatgtatagcttcatctaacattgaagcagtgtccattttggttccaccaggtactagtctttgcaatatccttatcctttcacttatc |
396 |
Q |
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|||||| |||||||| ||||||||||| |||||||| ||||| |||||||| |||||||| ||||| | |||||||| ||| ||||| | || ||||| |
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| T |
46899443 |
aaacttaacataatgaatagcttcatccaacattgatgcagtatccattttagttccacctggtaccattctttgcagtattcttattttctcgcttatt |
46899344 |
T |
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| Q |
397 |
ctttctcttctatgcctagcagctacactttgtggatc |
434 |
Q |
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| T |
46899343 |
ctttctcttctgtgtctagctgctatactctgaggatc |
46899306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 436
Target Start/End: Original strand, 43186994 - 43187115
Alignment:
| Q |
315 |
agcttcatctaacattgaagcagtgtccattttggttccaccaggtactagtctt-tgcaatatccttatcctttcacttatcctttctcttctatgcct |
413 |
Q |
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| T |
43186994 |
agcttcatcaagcattgatgcagtgtccatcttggttccaccaggaacaa-tcttctgcaagactctaatcctttcacttattctttcccttctttgcct |
43187092 |
T |
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| Q |
414 |
agcagctacactttgtggatcct |
436 |
Q |
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| T |
43187093 |
agccgccacagtttgtggatcct |
43187115 |
T |
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