View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11306_low_14 (Length: 229)
Name: NF11306_low_14
Description: NF11306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11306_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 6 - 127
Target Start/End: Original strand, 40671619 - 40671740
Alignment:
| Q |
6 |
agaatttacactaattactaacatagtgttaagtttcttactatactaatcataatgttttacaactcaaccaataagatgtcaattttccaaaacatta |
105 |
Q |
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| T |
40671619 |
agaatttacactaattactaacatagtgttatgtttcttactatactaatcataatgttttacaactcaaccaataagatgtcaattttccaaaacatta |
40671718 |
T |
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| Q |
106 |
tgatcttcaatcatggtttaat |
127 |
Q |
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| T |
40671719 |
tgatcttcaatcatggtttaat |
40671740 |
T |
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Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 40671792 - 40671883
Alignment:
| Q |
122 |
tttaatgcattctgatatgttactgtcttgaacattggacacaatcatgaaaactctcttaagttggccaaagttttggagtttagaccaca |
213 |
Q |
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| T |
40671792 |
tttaatgcattctgatatgttactgtcttgaacattggacccaatcatgaaaactctcttaagttggccaaagttttggagtttagaccaca |
40671883 |
T |
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