View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11306_low_2 (Length: 403)
Name: NF11306_low_2
Description: NF11306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11306_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 7138601 - 7138225
Alignment:
| Q |
11 |
cataggctcattaactaacatcataaatatttaaagacgaagagacttcagacaaatatcttcaaacaaagcatcacttgatgcatccgtgaagctgatg |
110 |
Q |
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| T |
7138601 |
cataggctcattaacaaacatcataaatatttaaagacgaagagacttcagacaaatatcttcaaagagagcatcacttgatgcatccgtgaagctgatg |
7138502 |
T |
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| Q |
111 |
attcatttaagattgtctttttcatcaacttctgctctaaccatctctactagcagagaaaaacaaattgacgagaaatgaaactaacaataaaaacacg |
210 |
Q |
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| T |
7138501 |
attcatttaagatcgtctttttcatcaacttctgctctaaccatctctactagcagagaaaaacaaattgacgagaaatgaaactaacaataaaaacacg |
7138402 |
T |
|
| Q |
211 |
aagaaatactgaaatgaagaatgagatgaacgtaaaagccatagcctagaagaagagtaatattcgaaattaggcaccaaaaggacagacaaaatggaaa |
310 |
Q |
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| T |
7138401 |
aagaaatactgaaatgaagaatgagatgaacgtaaaagccatagcctagaagaagagtaatattcgaaattaggcaccaaaaggacaaacaaaatggaaa |
7138302 |
T |
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| Q |
311 |
tggtgacctcgacatgcttctccacaaaatatctcatttcccactaaagaaactcacatcgcttagtatctccaacc |
387 |
Q |
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| T |
7138301 |
tggtgacctcgacatacttctccgcaaaatctctcatttcccactaaagaaactcacatcgcttagtatctccaacc |
7138225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 312 - 387
Target Start/End: Complemental strand, 7132454 - 7132379
Alignment:
| Q |
312 |
ggtgacctcgacatgcttctccacaaaatatctcatttcccactaaagaaactcacatcgcttagtatctccaacc |
387 |
Q |
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| T |
7132454 |
ggtgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcgcttagtatctccaacc |
7132379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 314 - 387
Target Start/End: Complemental strand, 7135375 - 7135302
Alignment:
| Q |
314 |
tgacctcgacatgcttctccacaaaatatctcatttcccactaaagaaactcacatcgcttagtatctccaacc |
387 |
Q |
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|||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7135375 |
tgaccttgacatgcttctccacaaaatctctcctttcccactaaagaaactcacatcgcttagtatctccaacc |
7135302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 8677224 - 8677138
Alignment:
| Q |
27 |
aacatcataaatatttaaagacgaagagacttcagacaaatatcttcaaacaaagcatcacttgatgcatccgtgaagctgatgatt |
113 |
Q |
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| T |
8677224 |
aacatcttaaatatttaaagacgtacaaacttcagacaaaaatcttcgaacaaagcatcatttgatgcatccgtaaagctgatgatt |
8677138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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