View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11306_low_9 (Length: 250)
Name: NF11306_low_9
Description: NF11306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11306_low_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 43107767 - 43107525
Alignment:
| Q |
8 |
aagcaaaggctaattgcaattctaatgatgtaaaattaagttgtgatgtttgcaaaaagaacttccaatccaataaggctttacatggtcacatgagatc |
107 |
Q |
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| T |
43107767 |
aagcagaggctaattgcaattctaatgatgtaaaattaagttgtgatgtttgcaaaaagaacttccaatccaataaggctttacatggtcacatgagatc |
43107668 |
T |
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| Q |
108 |
tcatcctgaaagggaatggcggggtatgaaccctaataaggataataatattgattatcatgattatgatcaagatcaatattttcttagtgcattcaat |
207 |
Q |
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| T |
43107667 |
tcatcctgaaagggaatggcggggtatgaaccctaataaggataataatattgattatcatgattatgatcaagatcaatattttcttagtgcattcaat |
43107568 |
T |
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| Q |
208 |
tccaaggaattggttattgatgatgaatcaaaatcttggccac |
250 |
Q |
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| T |
43107567 |
tccaaggaattggttattgatgaggaatcaaaatcttggccac |
43107525 |
T |
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