View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11307_high_2 (Length: 365)
Name: NF11307_high_2
Description: NF11307
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11307_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 33168646 - 33168366
Alignment:
| Q |
18 |
ttgtatacataattacttatgcatatgatgcattctttctctttctgcatccatttatatccaaactagttcattagatttttgtgatgagtactagttg |
117 |
Q |
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| T |
33168646 |
ttgtatacataattacttatgcatatgatgcattctttctctttctgcatccatttatatccaaactagttcattagatttttgtgatgagtactagttg |
33168547 |
T |
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| Q |
118 |
ttcttaaatttgagatgctcattaacaccaatagcaataaaattttaaatttatgatacaacattacgacgtcaattgatttttggtaaatttgacgacg |
217 |
Q |
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| T |
33168546 |
ttcttaagtttgagatgctcattaacaccaatagcaataaaattttaaatttatgatagaacattacgacgtcaattgatttttggtaaatttgatgatg |
33168447 |
T |
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| Q |
218 |
taggaagacattttcggattggtaaattggaaaagaagaaagttattgttgttatgagtggagagggtatggtaagctaaa |
298 |
Q |
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| T |
33168446 |
taggaagacattttcggattggtgaattggaaaagaagaaggttattgttgttatgagtggagagggtatggtaagctaaa |
33168366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 217 - 297
Target Start/End: Complemental strand, 33172037 - 33171957
Alignment:
| Q |
217 |
gtaggaagacattttcggattggtaaattggaaaagaagaaagttattgttgttatgagtggagagggtatggtaagctaa |
297 |
Q |
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| T |
33172037 |
gtaggaagacattttcggattggtgaattggaaaagaagaaggttattgttgttatgactggagagagtatggtaagctaa |
33171957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 33147253 - 33147177
Alignment:
| Q |
217 |
gtaggaagacattttcggattggtaaattggaaaagaagaaagttattgttgttatgagtggagagggtatggtaag |
293 |
Q |
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| T |
33147253 |
gtaggaagacattttcgcattggtgaattggaaaagaaaaaggttattgttgttatgactggattgagtatggtaag |
33147177 |
T |
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