View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11308_high_1 (Length: 554)
Name: NF11308_high_1
Description: NF11308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11308_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 175 - 540
Target Start/End: Complemental strand, 41966436 - 41966090
Alignment:
| Q |
175 |
tgtagaattgattttgatatatttaaatatgtttgcatataattgaatttacctcaagaaccgattataactcagaacacaaaatttaaagtttttgctt |
274 |
Q |
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| T |
41966436 |
tgtagaattaattttgatatatttaaatatgtttgcgtataattgaatttacctcaagaactgattatagctca-aacacaaaatttaaagtttttgctt |
41966338 |
T |
|
| Q |
275 |
cttcaattgaattttaacatcaaatttattgttgcttcaattcacattgattcaagtcataactcgtttttagtagaaaccaatttttcaaaatcaacta |
374 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| |||||||||||| |
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| T |
41966337 |
cttcaattgaattttaacatcaaatttattgtttcttcaattcacattgattcaagtcataactcatttttagtaaaaaacaattttacaaaatcaacta |
41966238 |
T |
|
| Q |
375 |
attcaaagtcaannnnnnnncaccgcataatcaaacacatacttgaatgataaaatgaattgaacttctatagagctgcttcggcaagaaaaacttacca |
474 |
Q |
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| T |
41966237 |
attcaaattcaattttttttcaccgcataatcaaacacatact----tgataaaatgaattgaa--------------cttcggcaagaaaaacttacca |
41966156 |
T |
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| Q |
475 |
ggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtatg |
540 |
Q |
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| T |
41966155 |
ggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggtatg |
41966090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 39097159 - 39097220
Alignment:
| Q |
130 |
tatgtttggttttacttataaagagatcagaattgattatggagttgtagaattgattttga |
191 |
Q |
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| T |
39097159 |
tatgtttggtttcacttttagagagaccgaaattgattatagaggtgtagaattgattttga |
39097220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 35108126 - 35108202
Alignment:
| Q |
122 |
attaagtgtatgtttggttttacttataaagagatcagaattgattatggagttgtagaattgattttgatatattt |
198 |
Q |
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| T |
35108126 |
attaagtgtatctttggtttcacttttagagaggtcaaaattgattttggaagtgtataattgattctgacatattt |
35108202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 6e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 11 - 198
Target Start/End: Complemental strand, 32681556 - 32681367
Alignment:
| Q |
11 |
gcatagggggagatatttaaatggattcacatacaatgtttccattttaatttttggccaaattactct--gaataataaatgcttaggttaaattttaa |
108 |
Q |
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| T |
32681556 |
gcatagggggagatatttaaatggattcacatacaatgtttccattttaatttttggccaaattactctatgaataataaatgcttaggttaaattttaa |
32681457 |
T |
|
| Q |
109 |
atggattactataattaagtgtatgtttggttttacttataaagagatcagaattgattatggagttgtagaattgattttgatatattt |
198 |
Q |
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| T |
32681456 |
atggattactataattaagtgtatgtttggttttacttataaagaggtcagaattgattatggagttgtagaattgattttgatatattt |
32681367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 175 - 322
Target Start/End: Complemental strand, 1227826 - 1227680
Alignment:
| Q |
175 |
tgtagaattgattttgatatatttaaatatgtttgcatataattgaatttacctcaagaaccgattataactcagaacacaaaatttaaagtttttgctt |
274 |
Q |
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|||| ||||||||||||||||||||||| |||| || |||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
1227826 |
tgtaaaattgattttgatatatttaaatgtgttcgcgtataattgaatttacctcaaaaaccgattataactc-gaagacaaaatttaaagtttttgctt |
1227728 |
T |
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| Q |
275 |
cttcaattgaattttaacatcaaatttattgttgcttcaattcacatt |
322 |
Q |
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| T |
1227727 |
ctacaattgatttttagcatcaaatttattgttacttcaattcacatt |
1227680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 466 - 537
Target Start/End: Complemental strand, 1227546 - 1227475
Alignment:
| Q |
466 |
aacttaccaggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggt |
537 |
Q |
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| T |
1227546 |
aacttaccaggagaagagagaagacaaggaataaggcttgaatggacttcatttcttttgctaagatgtggt |
1227475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 341 - 386
Target Start/End: Complemental strand, 1227649 - 1227604
Alignment:
| Q |
341 |
tttttagtagaaaccaatttttcaaaatcaactaattcaaagtcaa |
386 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||| |||| |
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| T |
1227649 |
tttttaatagaaaccaattttacaaaatcaactaattcaaaatcaa |
1227604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 36780307 - 36780243
Alignment:
| Q |
130 |
tatgtttggttttacttataaagagatcagaattgattatggagttgtagaattgattttgatat |
194 |
Q |
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|||||||| |||||||| || || || || |||||||||||||| |||||||||||||||||||| |
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| T |
36780307 |
tatgtttgattttacttttagagggaccataattgattatggaggtgtagaattgattttgatat |
36780243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 14644588 - 14644653
Alignment:
| Q |
126 |
agtgtatgtttggttttacttataaagagatcagaattgattatggagttgtagaattgattttga |
191 |
Q |
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||||||||||||||| |||| ||||| | || |||||||||||||| |||| |||||||||||| |
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| T |
14644588 |
agtgtatgtttggttcaacttttaaaggggacaaaattgattatggagatgtaaaattgattttga |
14644653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 47322096 - 47322035
Alignment:
| Q |
130 |
tatgtttggttttacttataaagagatcagaattgattatggagttgtagaattgattttga |
191 |
Q |
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|||||||||||| |||| || |||||| | |||| ||| ||||| ||||||||||||||||| |
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| T |
47322096 |
tatgtttggtttcacttttagagagattataatttattgtggaggtgtagaattgattttga |
47322035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 160 - 196
Target Start/End: Original strand, 17119029 - 17119065
Alignment:
| Q |
160 |
aattgattatggagttgtagaattgattttgatatat |
196 |
Q |
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| T |
17119029 |
aattgattttagagttgtagaattgattttgatatat |
17119065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 21691414 - 21691342
Alignment:
| Q |
126 |
agtgtatgtttggttttacttataaagagatcagaattgattatggagttgtagaattgattttgatatattt |
198 |
Q |
| |
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|||| |||||||||| |||| || || || ||||||||||| ||||| ||||||||||||| ||| |||||| |
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| T |
21691414 |
agtgcatgtttggttccacttctagagggaccagaattgattctggaggtgtagaattgattctgacatattt |
21691342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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