View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11308_low_2 (Length: 475)
Name: NF11308_low_2
Description: NF11308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11308_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 163 - 446
Target Start/End: Original strand, 36515675 - 36515958
Alignment:
| Q |
163 |
aggtgtgaatgtgagaacacaaatgttaaatgggcgcattccatgctaagaaactatttttaatactcacgtgaaacttgggttaaattctcacattatc |
262 |
Q |
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| T |
36515675 |
aggtgtgaatgtgagaacacaaatgttaaatgggcgcattccatgctaagaaactatttttaatactcacgtgaaacttgggttaaattctcacattatc |
36515774 |
T |
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| Q |
263 |
atattttacactgctcaattactatgttaaatgaatttgaatctcactaaagttagctcacaagatgaggatgaccaactccatatacacgtctaacaat |
362 |
Q |
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| T |
36515775 |
atattttacactgctcaattactatgttaaatgaatttgaatctcactaaagttagctcacaagatgaggatgaccaactccatatacacgtctaacaat |
36515874 |
T |
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| Q |
363 |
ctaatacaacttcaataacaactttgttacgttctccctaggttgcaggttcgattctcctagtatttagtttaactttttttt |
446 |
Q |
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| T |
36515875 |
ctaatacaacttcaataacaactttgttacgttctccctaggttgcaggttcgattctcctagtatttagtttaactttttttt |
36515958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 35 - 366
Target Start/End: Complemental strand, 36805721 - 36805377
Alignment:
| Q |
35 |
tgtaagagattaaaactcttaaatatggtttgatctcaaccacatattaaataggcttcaatttcatctcaaaagttagctcaaaagatgaaggtgttta |
134 |
Q |
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| T |
36805721 |
tgtaagagattaaaactcttaaatatggtttgatctcaaccacatattaaataagcttcaatttcatcccaaaatttagctcaaaagatgaaggtgttta |
36805622 |
T |
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| Q |
135 |
gccaattgagctcaatcacttagttatgaggtgtgaatgtgagaacacaaatgttaaatgggcgcattccatgctaagaaactatttttaatac------ |
228 |
Q |
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| T |
36805621 |
gcccgttgagctcaatcacttggttatgaggtgtgaatgtgagaacacaaatgttaaatgggcgcattccatgctaagaaactatttttaatactcactt |
36805522 |
T |
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| Q |
229 |
-------tcacgtgaaacttgggttaaattctcacattatcatattttacactgctcaattactatgttaaatgaatttgaatctcactaaagttagctc |
321 |
Q |
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| T |
36805521 |
tcatgtctcacgtgaaacttgagttaaattctcacattatcatactttacgccgttaaattactatgttaaatgaatttgaatctcattaaagttagctc |
36805422 |
T |
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| Q |
322 |
acaagatgaggatgaccaactccatatacacgtctaacaatctaa |
366 |
Q |
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| T |
36805421 |
acaagatgatgatgatcaactccatatacatgtctaacaatctaa |
36805377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 36515626 - 36515680
Alignment:
| Q |
77 |
catattaaataggcttcaatttcatctcaaaagttagctcaaaagatgaaggtgt |
131 |
Q |
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| T |
36515626 |
catattaaataggctccaatttcatctcaaaaattagctcagaagatgaaggtgt |
36515680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 36515505 - 36515551
Alignment:
| Q |
35 |
tgtaagagattaaaactcttaaatatggtttgatctcaaccacatat |
81 |
Q |
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| T |
36515505 |
tgtaagaggttaaaactcttaaatacggtttgatctcaaccacatat |
36515551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 422
Target Start/End: Original strand, 36520215 - 36520251
Alignment:
| Q |
386 |
ttgttacgttctccctaggttgcaggttcgattctcc |
422 |
Q |
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| T |
36520215 |
ttgttacgttctccctaggttgcaggttcgattctcc |
36520251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 426
Target Start/End: Complemental strand, 36805357 - 36805293
Alignment:
| Q |
362 |
tctaatacaacttcaataacaactttgttacgttctccctaggttgcaggttcgattctcctagt |
426 |
Q |
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||||||||||||| |||||||||||||||| |||||| ||||||||| | || ||||| |||||| |
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| T |
36805357 |
tctaatacaacttgaataacaactttgttatgttctctctaggttgccgatttgattcccctagt |
36805293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 358
Target Start/End: Complemental strand, 36809695 - 36809613
Alignment:
| Q |
276 |
ctcaattactatgttaaatgaatttgaatctcactaaagttagctcacaagatgaggatgaccaactccatatacacgtctaa |
358 |
Q |
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| T |
36809695 |
ctcaaatactatatttaataaatttgaattccattaaagttagctcatacgatgaagatgaccaactacatatacacatctaa |
36809613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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