View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11308_low_3 (Length: 437)
Name: NF11308_low_3
Description: NF11308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11308_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 414779 - 414371
Alignment:
| Q |
1 |
tcaaatcaccatgcataaatactttgttataatcttacacatttacgaccaaatttccacaagtaagtgttcaagtcatgcatgagtcgggaaacaacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
414779 |
tcaaatcaccatgcataaatactttgttataatcttacacatttacgaccaaatttccacaagtaagtgttcaagtcatgcatgagtcgggaaacaacat |
414680 |
T |
|
| Q |
101 |
agtcttaaaatcataacagttctaaatgcactgagaaagagaaatcataaaccagtagtatgaaaaaagaagaaaaggagatgaaattgcaacatactaa |
200 |
Q |
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| T |
414679 |
agtcttaaaatcataacagttctaagtgcactgagaaagagaaatcataaaccagtagtatgaaacaagaagaaaaggagatgaaattgcaacatactaa |
414580 |
T |
|
| Q |
201 |
agcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatcttggtagactcattgtgcgctctaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
414579 |
agcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatcttggtagactcattgtgcgctctaa |
414480 |
T |
|
| Q |
301 |
ccaatctttctttgcaatcagcttccttatcagttgcttctttcaattcaagaaatattactttaaccttctctgtcagttcctccttccttgcttacca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
414479 |
ccaatctttctttgcaatcagcttccttatcagttgcttctttcaattcatgaaatatttctttaaccttctctgtcagttcctccttccttgcttccca |
414380 |
T |
|
| Q |
401 |
tttgttcaa |
409 |
Q |
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||||||||| |
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| T |
414379 |
tttgttcaa |
414371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 176 - 332
Target Start/End: Original strand, 37211616 - 37211772
Alignment:
| Q |
176 |
aggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatc |
275 |
Q |
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|||||| |||||| ||||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||| ||||||| ||| |||||||| | |
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| T |
37211616 |
aggagaagaaattacaacatactaaagcaaaccatcaattagtgagcaatcaacaaatcgtctgactttagatttgacatcttttactctttgagatgtt |
37211715 |
T |
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| Q |
276 |
ttggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatca |
332 |
Q |
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||||||||||||| ||| |||| |||||| ||||| |||||||| || |||||| |
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| T |
37211716 |
ttggtagactcatcctgcattctagtcaatctctctttccaatcagcctctttatca |
37211772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 177 - 332
Target Start/End: Original strand, 37217299 - 37217454
Alignment:
| Q |
177 |
ggagatgaaattgcaacatactaaagcaaatcatcaataagtgagcagtcaagaaatcgtctgactttagatttggcatctttgactatttgagatatct |
276 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||| ||||||||||||||||| ||||||||| | ||| || ||| |
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| T |
37217299 |
ggagatgaaattgcaacatactaaatcaaatcatcaaccagtgagccattaagaaattgtctgactttagatttgccatctttgattcttttgaatgtct |
37217398 |
T |
|
| Q |
277 |
tggtagactcattgtgcgctctaaccaatctttctttgcaatcagcttccttatca |
332 |
Q |
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|||||||||||| ||| |||||||||||| | ||| |||||||| || |||||| |
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| T |
37217399 |
tggtagactcatcatgcattctaaccaatctctttttccaatcagcctctttatca |
37217454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 37211478 - 37211559
Alignment:
| Q |
1 |
tcaaatcaccatgcataaatactttgttataatcttacacatttacgaccaaatttccacaagtaagtgttcaagtcatgcatg |
84 |
Q |
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|||||||||||||||||||||||| | |||||||||||| ||| | |||||| |||||| ||||| ||||||||||| ||||| |
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| T |
37211478 |
tcaaatcaccatgcataaatacttcgccataatcttacac-tttgccaccaaa-ttccacgagtaattgttcaagtcacgcatg |
37211559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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