View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11308_low_4 (Length: 356)
Name: NF11308_low_4
Description: NF11308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11308_low_4 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: scaffold0710 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 3912 - 3610
Alignment:
| Q |
19 |
atgtccacatgtttatccaatgaattattcnnnnnnncaacgtggaggttgacagaaattgatactatcaagccaaaacagatgattggcatgccaagtg |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3912 |
atgtccacatgtttatccaatgaattattctttttttcaacgtggaggttgacagaaattgatactatcaagccaaaacagatgattggcatgccaagtg |
3813 |
T |
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| Q |
119 |
accggatcatatattaaattaaagtaaatctcaaatttaaattcatgaacaaataagaatcttatgatatttgagctactgagataccatttttaggatt |
218 |
Q |
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| T |
3812 |
atcggatcatatattaaattaaagtaaatctcaaatttaaattcatgaacaaataagaatcttatgatatttgagctactgagataccatttttaggatt |
3713 |
T |
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| Q |
219 |
ctaactggtttattttttattttcttaacactgttatttagaactatgcccttcaaatccatctattccattgtcaatgccaaacccagtgcatgcttgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3712 |
ctaactggtttattttttattttcttaacactgttatttagaactatgcccttcaaatccatctattccattgttaatgccaaacccagtgcatgcttgt |
3613 |
T |
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| Q |
319 |
tac |
321 |
Q |
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||| |
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| T |
3612 |
tac |
3610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 51859953 - 51859651
Alignment:
| Q |
19 |
atgtccacatgtttatccaatgaattattcnnnnnnncaacgtggaggttgacagaaattgatactatcaagccaaaacagatgattggcatgccaagtg |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51859953 |
atgtccacatgtttatccaatgaattattctttttttcaacgtggaggttgacagaaattgatactatcaagccaaaacagatgattggcatgccaagtg |
51859854 |
T |
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| Q |
119 |
accggatcatatattaaattaaagtaaatctcaaatttaaattcatgaacaaataagaatcttatgatatttgagctactgagataccatttttaggatt |
218 |
Q |
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| T |
51859853 |
atcggatcatatattaaattaaagtaaatctcaaatttaaattcatgaacaaataagaatcttatgatatttgagctactgagataccatttttaggatt |
51859754 |
T |
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| Q |
219 |
ctaactggtttattttttattttcttaacactgttatttagaactatgcccttcaaatccatctattccattgtcaatgccaaacccagtgcatgcttgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51859753 |
ctaactggtttattttttattttcttaacactgttatttagaactatgcccttcaaatccatctattccattgttaatgccaaacccagtgcatgcttgt |
51859654 |
T |
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| Q |
319 |
tac |
321 |
Q |
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||| |
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| T |
51859653 |
tac |
51859651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 125 - 236
Target Start/End: Complemental strand, 51856370 - 51856259
Alignment:
| Q |
125 |
tcatatattaaattaaagtaaatctcaaatttaaattcatgaacaaataagaatcttatgatatttgagctactgagataccatttttaggattctaact |
224 |
Q |
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|||||||||||||| |||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856370 |
tcatatattaaattgaagtaaatattaaattcaaattcatgaacaaataagaatcttatgatatttgagctactgagataccatttttaggattctaact |
51856271 |
T |
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| Q |
225 |
ggtttatttttt |
236 |
Q |
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| T |
51856270 |
gatttatttttt |
51856259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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