View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11308_low_6 (Length: 211)
Name: NF11308_low_6
Description: NF11308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11308_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 3e-59; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 5182758 - 5182563
Alignment:
| Q |
1 |
aagtatcgtaaattatcacaatctgtggccagttgcttaggtaactcacccgagaaatgattataagcgaagcccaagtacttaagtttattcatcttac |
100 |
Q |
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|||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| | || || | ||||||||| ||||| |||||||||| |
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| T |
5182758 |
aagtattgtaaattatcacaacctgtggccagttgtttaggtaactcacctgagaaatgattctgagagaggtccaagtactcaagttgtttcatcttac |
5182659 |
T |
|
| Q |
101 |
caattgatgaaggtatatttcctttaaagctattccatgaaaggttcaaagagattacactaggaaggaatataccaatatcttctgggagcaaac |
196 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||| | | |||||||||||||||||||||||||||| ||| ||||||| |
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| T |
5182658 |
caattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaatacttaacactaggaaggaatataccaatatcttttggaagcaaac |
5182563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 5196158 - 5195963
Alignment:
| Q |
1 |
aagtatcgtaaattatcacaatctgtggccagttgcttaggtaactcacccgagaaatgattataagcgaagcccaagtacttaagtttattcatcttac |
100 |
Q |
| |
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|||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||| | || |||| ||||| | ||||| |||||||||| |
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| T |
5196158 |
aagtattgtaaattatcacaacctgtggccagttgtttaggtaactcacctgagaaatgattttgagagaagtccaagagttgaagttgtttcatcttac |
5196059 |
T |
|
| Q |
101 |
caattgatgaaggtatatttcctttaaagctattccatgaaaggttcaaagagattacactaggaaggaatataccaatatcttctgggagcaaac |
196 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||| || | ||| |||||||||||||||| ||||||| ||| ||||||| |
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| T |
5196058 |
caattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaacattaggaaggaatataccgatatcttttggaagcaaac |
5195963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 4842099 - 4842294
Alignment:
| Q |
1 |
aagtatcgtaaattatcacaatctgtggccagttgcttaggtaactcacccgagaaatgattataagcgaagcccaagtacttaagtttattcatcttac |
100 |
Q |
| |
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|||||| ||||||||| ||||||| ||||||||| |||||||||||||| ||||||||||| | || || | |||||||||||||||| |||||||||| |
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| T |
4842099 |
aagtattgtaaattattgcaatctgcggccagttgtttaggtaactcacctgagaaatgattctgagagaggtccaagtacttaagttttttcatcttac |
4842198 |
T |
|
| Q |
101 |
caattgatgaaggtatatttcctttaaagctattccatgaaaggttcaaagagattacactaggaaggaatataccaatatcttctgggagcaaac |
196 |
Q |
| |
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||||||||||||||||||||||| |||| |||| |||||| |||| | || | |||||||||||||||||||||||||||||||| ||||||| |
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| T |
4842199 |
aaattgatgaaggtatatttccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatcttctggaagcaaac |
4842294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 5214315 - 5214132
Alignment:
| Q |
1 |
aagtatcgtaaattatcacaatctgtggccagttgcttaggtaactcacccgagaaatgattataagcgaagcccaagtacttaagtttattcatcttac |
100 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| || || | ||||| ||| |||||| |||||||||| |
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| T |
5214315 |
aagtattgtaaattatcacaacctgtggccagttgtttaggtaactcacctgagaaatgattatgagagaggtccaaggactcaagttttttcatcttac |
5214216 |
T |
|
| Q |
101 |
caattgatgaaggtatatttcctttaaagctattccatgaaaggttcaaagagattacactaggaaggaatataccaatatctt |
184 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| |||||| |||| | || | |||||||||||||||||||||||||||| |
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| T |
5214215 |
caattgatgaaggtatatttccttcaaagttatttgatgaaaaattcatataggtaacactaggaaggaatataccaatatctt |
5214132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 5173423 - 5173250
Alignment:
| Q |
1 |
aagtatcgtaaattatcacaatctgtggccagttgcttaggtaactcacccgagaaatgattataagcgaagcccaagtacttaagtttattcatcttac |
100 |
Q |
| |
|
|||||| |||||||||| |||| |||||||||||| |||||||||||||| ||||||| ||||| || || | | ||||||| ||| || |||||||||| |
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| T |
5173423 |
aagtattgtaaattatcgcaatatgtggccagttgtttaggtaactcacctgagaaattattatgagagaggtcaaagtactcaagatttttcatcttac |
5173324 |
T |
|
| Q |
101 |
caattgatgaaggtatatttcctttaaagctattccatgaaaggttcaaagagattacactaggaaggaatata |
174 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||| || | | ||| |||||||||||| |
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| T |
5173323 |
caattgatgaaggtatatttccttcaaagctattccatgaaaagttcaaataggtaatacttggaaggaatata |
5173250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 5160513 - 5160365
Alignment:
| Q |
1 |
aagtatcgtaaattatcacaatctgtggccagttgcttaggtaactcacccgagaaatgattataagcgaagcccaagtacttaagtttattcatcttac |
100 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||| || ||||||||||||||||||||||||| || || | ||||| | |||||| || ||||||| |
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| T |
5160513 |
aagtatagtaaactatcagaatctgtggccagttgttttggtaactcacccgagaaatgattatgagagaggtccaagagcaaaagtttttttatcttac |
5160414 |
T |
|
| Q |
101 |
caattgatgaaggtatatttcctttaaagctattccatgaaaggttcaa |
149 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
5160413 |
caattgatgaaggtatatttccttcaaagctattccatgaaaagttcaa |
5160365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 91 - 196
Target Start/End: Complemental strand, 7142605 - 7142500
Alignment:
| Q |
91 |
ttcatcttaccaattgatgaaggtatatttcctttaaagctattccatgaaaggttcaaagagattacactaggaaggaatataccaatatcttctggga |
190 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||| |||||||||| |||||| ||||| | || |||||||||||||||||||||||||||||||| | |
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| T |
7142605 |
ttcatcataccaattgattaaggtatatttccttgaaagctattcaatgaaaagttcagatagtcaacactaggaaggaatataccaatatcttctggaa |
7142506 |
T |
|
| Q |
191 |
gcaaac |
196 |
Q |
| |
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|||||| |
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|
| T |
7142505 |
gcaaac |
7142500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 114 - 196
Target Start/End: Original strand, 4856686 - 4856768
Alignment:
| Q |
114 |
tatatttcctttaaagctattccatgaaaggttcaaagagattacactaggaaggaatataccaatatcttctgggagcaaac |
196 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| || | |||||||||||||||||||||||||||| ||| ||||||| |
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|
| T |
4856686 |
tatatttccttcaaagctattccatgaaatgttcaaataggtaacactaggaaggaatataccaatatcttttggaagcaaac |
4856768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 7142666 - 7142614
Alignment:
| Q |
9 |
taaattatcacaatctgtggccagttgcttaggtaactcacccgagaaatgat |
61 |
Q |
| |
|
|||| ||||||||||| |||||| ||| ||||||||||||||||||||||||| |
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|
| T |
7142666 |
taaactatcacaatctttggccaattgtttaggtaactcacccgagaaatgat |
7142614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 4856620 - 4856684
Alignment:
| Q |
22 |
tctgtggccagttgcttaggtaactcacccgagaaatgattataagcgaagcccaagtacttaag |
86 |
Q |
| |
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|||||||||| ||| | |||||||||||| ||||||||||| | || || | ||||||||||||| |
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|
| T |
4856620 |
tctgtggccaattgttcaggtaactcacctgagaaatgattctgagagaggtccaagtacttaag |
4856684 |
T |
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