View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_high_17 (Length: 311)
Name: NF11309A_high_17
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_high_17 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 265
Target Start/End: Complemental strand, 43411010 - 43410761
Alignment:
| Q |
23 |
acagacagacacaacacattcagatga---gaagttgtaagctagctag----gaggatggactgctgctgctgctgttgcggaaagtgtttggaagatt |
115 |
Q |
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| T |
43411010 |
acagacagacacaacacattcagatgatcagaagttgtaagctagctagctaggaggatggactgctgctgctgctgttgcggaaagtgtttggaagatt |
43410911 |
T |
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| Q |
116 |
gagaggggaagcttgaaaaagagagagtctaatggtacgtgtgtgagatgatgtgtgcaagtctttacattcttcaagatcagcatcacatgataacaca |
215 |
Q |
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| T |
43410910 |
gagaggggaagcttgaaaaagagagagtctaatggtacgtgtgtgagatgatgtgtgcaagtctttacattcttcaagatcagcatcacatgataacaca |
43410811 |
T |
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| Q |
216 |
acccattctccttcatcatccaaatattttagaaccaagttgttcatatc |
265 |
Q |
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| T |
43410810 |
acccattctccttcatcatccaaatattttagaaccaagttgttcatatc |
43410761 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 34899908 - 34899940
Alignment:
| Q |
279 |
gaactaaagggagatgtgtttatatgcatatag |
311 |
Q |
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| T |
34899908 |
gaactaaagagagatgtgtttatatgcatatag |
34899940 |
T |
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