View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_high_18 (Length: 303)
Name: NF11309A_high_18
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_high_18 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 42788698 - 42788979
Alignment:
| Q |
22 |
aatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtccctgttcggctagccatgaagttacgtattcttttcaa |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42788698 |
aatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtccctgttcggttagccatgaagttacgtattcttttcaa |
42788797 |
T |
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| Q |
122 |
tgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaatttc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42788798 |
tgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaatttc |
42788897 |
T |
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| Q |
222 |
agttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaattcatccaac |
303 |
Q |
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| T |
42788898 |
agttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaattcatccaac |
42788979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 42798236 - 42798517
Alignment:
| Q |
22 |
aatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtccctgttcggctagccatgaagttacgtattcttttcaa |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42798236 |
aatagtaataaaatttgtcaaatactagcttgccactattctttccttacatcttctttgtccctgttcggttagccatgaagttacgtattcttttcaa |
42798335 |
T |
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| Q |
122 |
tgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaatttc |
221 |
Q |
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| T |
42798336 |
tgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaatttc |
42798435 |
T |
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| Q |
222 |
agttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaattcatccaac |
303 |
Q |
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| T |
42798436 |
agttcattcaaaacaatattccaaagttccaattcaccttccttagttgactccttcaaaagtggactcaaattcatccaac |
42798517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 34566447 - 34566611
Alignment:
| Q |
98 |
catgaagttacgtattcttttcaatgcaacttccaaagtgtgttcactcatattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaa |
197 |
Q |
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|||||| | |||||||||||| | ||||| ||| | || | |||||||||||| ||||| || || ||||||||||| |||| ||||||||||||| |
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| T |
34566447 |
catgaaatcacgtattcttttgagtgcaagttcaagtgtttcttcactcatatttgcaaaacaaaccctaaaccaaccgggttcggaacaatgacaagaa |
34566546 |
T |
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| Q |
198 |
caccccggagatatattcaatttcagttcattcaaaacaatattccaaagttccaattcaccttc |
262 |
Q |
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| T |
34566547 |
caccctggtgaaatattaagcttaacttcattcaaaatctcattccaaagcttcaattcaccttc |
34566611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 47828785 - 47828714
Alignment:
| Q |
146 |
catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa |
217 |
Q |
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||||||||||||||| | |||||||| ||||||| | ||||||||||||| | || |||||||||||||| |
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| T |
47828785 |
catattagcaaagcaaatcctaaaccacccaggttcagaacaatgacaagaagatccaggagatatattcaa |
47828714 |
T |
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