View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_high_3 (Length: 562)
Name: NF11309A_high_3
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 7 - 561
Target Start/End: Complemental strand, 48674225 - 48673670
Alignment:
| Q |
7 |
gatccatacaagcctttccattgcaaccgaggaatcttactggttgccagacacaatctattgaattattgaaattggtctagattatataattctcaac |
106 |
Q |
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| T |
48674225 |
gatccatacaagcctttccattgcaaccgaggaatcttactggttgccagacacaatctattgaattattgaaattggtctagattatataattctcaac |
48674126 |
T |
|
| Q |
107 |
atcaattatcaggtagtggtggaccttgttaaccattcaagagtatcataattttctttaatgaaaaatgaaattaatattcaaattcgtcttttaaatc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48674125 |
atcaattatcaggtagtggtggaccttgttaaccattcaagagtatcataattttctttaatgaaaaatgaaattaatattcaaattggtcttttaaatt |
48674026 |
T |
|
| Q |
207 |
ataggaatgtattaatcttttttggtgttaacctccggtttttcgagaaagggacattagtaatccaaagttcagccgaaagataagtaaagtctgacga |
306 |
Q |
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| T |
48674025 |
ataggaatgtattaatcttttttggtgttaacctccggtttctcgagaaaggggcattagtaatccaaagttcagccgaaaggtaagtaaagtctgacga |
48673926 |
T |
|
| Q |
307 |
taaattgtttccaccgggagtcgaaattggattcttccaaatgattcatattaatggaagctctttaaccacttaaattcaatcatttagttgcaatgta |
406 |
Q |
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| T |
48673925 |
taaattgttttcacctgaagtcgaaattggattcttccaaatgattcatattaatggaagctctttaaccacttaaattcaatcatttagttgcaatgta |
48673826 |
T |
|
| Q |
407 |
taaatctaatccctcaca-nnnnnnngaaagaatttaatccctcacattattgatattctaaaaggatcctgaaattgcaacattttaatcaaacttgtc |
505 |
Q |
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| T |
48673825 |
taaatctaatccctcacattttttttgaaagaatttaatccctcacattattgatattctaaaaggatcctgaaattgcaacattttaatcaaacttgtc |
48673726 |
T |
|
| Q |
506 |
catgtgttgttatatggaggataaatttgaaagtaagttaatattattggagatgc |
561 |
Q |
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| T |
48673725 |
catgtgttgttatatggaggataaatttgaaagtaagttaataatattggtgatgc |
48673670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 505
Target Start/End: Complemental strand, 4156067 - 4156013
Alignment:
| Q |
452 |
attattgatattctaaaaggatc-ctgaaattgcaacattttaatcaaacttgtc |
505 |
Q |
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| T |
4156067 |
attatggatattctaaaatgatctctgaaattgcaaaattttaatcaaatttgtc |
4156013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 304
Target Start/End: Original strand, 16297941 - 16297992
Alignment:
| Q |
253 |
gaaagggacattagtaatccaaagttcagccgaaagataagtaaagtctgac |
304 |
Q |
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| T |
16297941 |
gaaagagaccttagtaatccagagttcggccgaaaaataagtaaagtctgac |
16297992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 506
Target Start/End: Complemental strand, 40258868 - 40258808
Alignment:
| Q |
447 |
ctcacattattgatattctaaaaggatc-ctgaaattgcaacattttaatcaaacttgtcc |
506 |
Q |
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| T |
40258868 |
ctcacattatcgatattcaaaaatgatctctgaaattacaaaattttaatcaaatttgtcc |
40258808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 499
Target Start/End: Original strand, 12241375 - 12241431
Alignment:
| Q |
444 |
tccctcacattattgatattctaaaaggatcct-gaaattgcaacattttaatcaaa |
499 |
Q |
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| T |
12241375 |
tccctcacattatcgatattttaaaatgattcttgaaattgcaaaattttaatcaaa |
12241431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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