View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_high_9 (Length: 357)

Name: NF11309A_high_9
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_high_9
NF11309A_high_9
[»] chr4 (1 HSPs)
chr4 (11-335)||(35894571-35894895)
[»] chr1 (5 HSPs)
chr1 (286-330)||(2436015-2436059)
chr1 (288-330)||(2435909-2435951)
chr1 (286-319)||(10378858-10378891)
chr1 (286-318)||(17470480-17470512)
chr1 (290-330)||(35117890-35117930)
[»] chr7 (2 HSPs)
chr7 (288-330)||(19265786-19265828)
chr7 (286-330)||(19266419-19266463)
[»] chr3 (2 HSPs)
chr3 (288-330)||(26573120-26573162)
chr3 (288-330)||(45620951-45620993)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 335
Target Start/End: Complemental strand, 35894895 - 35894571
Alignment:
Q  11 ttattctgaagtgacaaaagaggataacaaacattttctgatacaaacaggatctaataatcaaaatgaatacttatactctaaaatctttaaagtcaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35894895 ttattctgaagtgacaaaagaggataacaaacattttctgatacaaacaggatctaataatcaaaatgaatacttatactctaaaatctttaaagtcaat 35894796  T
Q  111 gaaaaactttttggcaagaaaagtgactgttatataaaggcttcagaggttttaaaaacaaaattatgatggtaaaatggaaaatgataaagacttagta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35894795 gaaaaactttttggcaagaaaagtgactgttatataaaggcttcagaggttttaaaaacaaaattatgatggtaaaatggaaaatgataaagacttagta 35894696  T
Q  211 ttatagattgtcgactccatgttggttggtatgagaagcttgatggagtatttaagtttggtcatatgaaggtttgtgcaacggtaaagttgttgtcccg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  35894695 ttatagattgtcgactccatgttggttggtatgagaagcttgatggagtatttaagtttgctcatatgaaggtttgtgcaacggtaaagttgttgtcctg 35894596  T
Q  311 tgactgaaaagtcgcgggtttaaga 335  Q
    |||||||||||||||||||||||||    
T  35894595 tgactgaaaagtcgcgggtttaaga 35894571  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 330
Target Start/End: Complemental strand, 2436059 - 2436015
Alignment:
Q  286 gtgcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 330  Q
    |||||||||||||||||||||| ||||||||||| ||| ||||||    
T  2436059 gtgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt 2436015  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 2435951 - 2435909
Alignment:
Q  288 gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 330  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||    
T  2435951 gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt 2435909  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 10378891 - 10378858
Alignment:
Q  286 gtgcaacggtaaagttgttgtcccgtgactgaaa 319  Q
    |||||||||||||||||||||| |||||||||||    
T  10378891 gtgcaacggtaaagttgttgtcacgtgactgaaa 10378858  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 318
Target Start/End: Complemental strand, 17470512 - 17470480
Alignment:
Q  286 gtgcaacggtaaagttgttgtcccgtgactgaa 318  Q
    |||||||||||||||||||||| ||||||||||    
T  17470512 gtgcaacggtaaagttgttgtcacgtgactgaa 17470480  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 35117930 - 35117890
Alignment:
Q  290 aacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 330  Q
    |||||||||||||||||| ||||||||||| ||| ||||||    
T  35117930 aacggtaaagttgttgtcacgtgactgaaaggtcacgggtt 35117890  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 19265786 - 19265828
Alignment:
Q  288 gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 330  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||    
T  19265786 gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt 19265828  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 19266419 - 19266463
Alignment:
Q  286 gtgcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 330  Q
    ||||||||||||||||||||||  |||||||||| |||| |||||    
T  19266419 gtgcaacggtaaagttgttgtcatgtgactgaaaggtcgtgggtt 19266463  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 330
Target Start/End: Original strand, 26573120 - 26573162
Alignment:
Q  288 gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 330  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||    
T  26573120 gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt 26573162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 330
Target Start/End: Complemental strand, 45620993 - 45620951
Alignment:
Q  288 gcaacggtaaagttgttgtcccgtgactgaaaagtcgcgggtt 330  Q
    |||||||||||||||||||| ||||||||||| ||| ||||||    
T  45620993 gcaacggtaaagttgttgtcacgtgactgaaaggtcacgggtt 45620951  T

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