View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_1 (Length: 944)

Name: NF11309A_low_1
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_1
NF11309A_low_1
[»] chr1 (4 HSPs)
chr1 (34-923)||(30272154-30273044)
chr1 (609-751)||(30270472-30270614)
chr1 (517-698)||(31141945-31142127)
chr1 (575-614)||(34470027-34470066)
[»] scaffold0856 (2 HSPs)
scaffold0856 (145-467)||(4547-4872)
scaffold0856 (516-751)||(4885-5117)
[»] chr8 (2 HSPs)
chr8 (517-614)||(21634803-21634901)
chr8 (526-592)||(5515537-5515604)
[»] chr7 (8 HSPs)
chr7 (517-614)||(32089262-32089360)
chr7 (517-614)||(32096735-32096833)
chr7 (517-614)||(39128489-39128587)
chr7 (517-614)||(39478458-39478556)
chr7 (517-614)||(41706626-41706724)
chr7 (517-614)||(41812162-41812260)
chr7 (517-614)||(32093019-32093117)
chr7 (517-614)||(32087907-32088005)
[»] chr6 (4 HSPs)
chr6 (517-614)||(26217231-26217329)
chr6 (537-614)||(7618947-7619025)
chr6 (560-614)||(11187906-11187960)
chr6 (536-604)||(18871931-18872001)
[»] chr3 (5 HSPs)
chr3 (517-614)||(38044518-38044616)
chr3 (517-614)||(48837988-48838086)
chr3 (526-604)||(50152365-50152444)
chr3 (526-604)||(50903997-50904076)
chr3 (526-603)||(50916160-50916242)
[»] chr2 (7 HSPs)
chr2 (752-923)||(30066809-30066980)
chr2 (767-869)||(30250577-30250679)
chr2 (526-596)||(32271350-32271421)
chr2 (34-83)||(12089163-12089212)
chr2 (747-856)||(30278190-30278299)
chr2 (756-836)||(30185990-30186070)
chr2 (770-870)||(30788920-30789020)
[»] chr4 (2 HSPs)
chr4 (561-597)||(7772341-7772377)
chr4 (561-597)||(7777949-7777985)
[»] chr5 (1 HSPs)
chr5 (572-603)||(18352651-18352682)


Alignment Details
Target: chr1 (Bit Score: 756; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 756; E-Value: 0
Query Start/End: Original strand, 34 - 923
Target Start/End: Complemental strand, 30273044 - 30272154
Alignment:
Q  34 agatgacatgaaggtgcagaacaaagaaactgaaattatcaatttggaagaaaccacttgaaacaataaacaatttcaagggtcctccctatggctctct 133  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||    
T  30273044 agatgacatgaaggtgcagaacaaagaaactgaaattatcaatttggaagaaaccaattgaaacaacaaacaatttcgagggtcctccctatggctctct 30272945  T
Q  134 ccctctcttatgtccttcttcattgtaatcttcctgatgattcttctacctccttcctatggcattatagactacaggacatattttctaattattctat 233  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30272944 ccctctct-atgtccttcttcattgtaatcttcctgatgattcttctacctccttcctatggcattatagactataggacatattttctaattattctat 30272846  T
Q  234 acacacaaatgaaagtgttgttttattacaaaactatcaattacaataggttgttcaaaactattaaattaacataagcaacaacacagagaa-caaaaa 332  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30272845 acacacaaatgaaagtgttgttttatcacaaaactatcaattacaataggttgttcaaaactattaaattaacataagcaacaacacagagaaccaaaaa 30272746  T
Q  333 tatgatagagagacactatgcatccatgagtaagattagtgaaaagccagtcaagtttgttttcaaacatcatagcgaagcacatgggatgatgaaaaaa 432  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30272745 tatgatagtgagacactatgcatccatgagtaagattagtgaaaagccagtcaagtttgttttcaaacatcatagcgaagctcatgggatgatgaaaaaa 30272646  T
Q  433 gaagccaataaccgcagccaacgaagggaatcaaaggaagacgca-gtgaacgaattgatgaaggaagnnnnnnnnnnnnnnnntaatttgggtcatttc 531  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||                ||||||||||||||||    
T  30272645 gaagccaataaccgcagccaacgaagggaatcaaaggaagacgcaggtgaacgaattgatgaaggaagaaaaaaaagtaaaaaataatttgggtcatttc 30272546  T
Q  532 ttgatttgtgcgtgtcattcttgcgcatggccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaagggataatagaagaaggtatt 631  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30272545 tcgatttgtgcgtgtcattgttgcgcatggccatgctaatcttctctgtatcattccaattttatcggatgtcattgaagggataatagaagaaggtatt 30272446  T
Q  632 tccgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttatttggtgcgtgcgtgcgaatgtgagacaactagaaaataaaatacag 731  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||    
T  30272445 tccgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttaattggtgcgtgcgtgcgaacgtgagacaactaggaaataaaatacag 30272346  T
Q  732 acatgcactgcacttactaattcagtttcagagttaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtca 831  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30272345 acatgcactgcacttaccaattcagtttcagagtcaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatctgtca 30272246  T
Q  832 atgtgtgagcgtgtctatctaagcccaacgcccaataacctgatatcagtccaaaagcgtggacgtaatctagaccaaacgaaccaatgaat 923  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30272245 atgtgtgagcgtgtctatctaagcccaacgcccaataacctgatatcagtccaaaagcgtggacgtaatctagaccaaacgaaccaatgaat 30272154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 609 - 751
Target Start/End: Original strand, 30270472 - 30270614
Alignment:
Q  609 aagggataatagaagaaggtatttccgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttatttggtgcgtgcgtgcgaatgtga 708  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |    
T  30270472 aagggatactagaagaaggtatttccgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttatttggtgcgtgcgtgcgtacgtta 30270571  T
Q  709 gacaactagaaaataaaatacagacatgcactgcacttactaa 751  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  30270572 gacaactagcaaataaaatacagacatgcactgcacttactaa 30270614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 517 - 698
Target Start/End: Original strand, 31141945 - 31142127
Alignment:
Q  517 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaagggat 615  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||     
T  31141945 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaagggac 31142044  T
Q  616 aatagaagaaggtatttccgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttatttggtgcgtgcgt 698  Q
    |||||||||  | |||| || ||||||||||   ||||||| |    | ||||||||||||||||||||||| ||| ||||||    
T  31142045 aatagaagagagcatttgcgcgttatataaacattaaataaatatgtatgttaaccgatgtgggacttattttgtgtgtgcgt 31142127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 614
Target Start/End: Complemental strand, 34470066 - 34470027
Alignment:
Q  575 ctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  34470066 ctctgtatcattccaattttatcggatgtccccgaaggga 34470027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 145 - 467
Target Start/End: Original strand, 4547 - 4872
Alignment:
Q  145 gtccttcttcattgtaatcttcctgatgattcttctacctccttcctatggcattatagactacaggacatattttctaattattctatacacacaaatg 244  Q
    |||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||||| |     
T  4547 gtccctcttcattgtaattttcctgatgattctactacctccttcctatggcattttagactatagtacatattt-ctaattattctatacacacaatta 4645  T
Q  245 aaagtgttgttttattacaaaactatcaattacaataggttgttcaaaactattaaattaacataagcaacaacacagagaa-caaaaatatgatagaga 343  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||    
T  4646 aaagtgttgttttaatacaaaactatcaattacaataggttgttcaaaactattaaattaacattagcaacaacacagagaaccaaaaatatgatagtga 4745  T
Q  344 gacactatgcatccatgagtaagattagtgaaaagccagtcaagtttgttttcaaacatcatagcgaagcacatgg---gatgatgaaaaaagaagccaa 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||||||    
T  4746 gacactatgcatccatgagtaagattagtgaaaagccagtcaagtttgttttcgaacatcatagcgaagcacatgggatgatgatgaaaaaagaagccaa 4845  T
Q  441 taaccgcagccaacgaagggaatcaaa 467  Q
    |||| ||||||||||||||||||||||    
T  4846 taactgcagccaacgaagggaatcaaa 4872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0856; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 516 - 751
Target Start/End: Original strand, 4885 - 5117
Alignment:
Q  516 taatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||  ||||||||    
T  4885 taatttgggtcatttctcgatttgtgcgtgtcatccttgcgcatgggccatgctgatcttctctgtatcattccaattttatcgaatgtccccgaaggga 4984  T
Q  615 taatagaagaaggtatttccgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttatttggtgcgtgcgtgcgaatgtgagacaac 714  Q
    || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    | |||||||    
T  4985 tactagaagaaggtattttcgtgttatataaaagctaaataattgcaaaggttaaccgatgtgggacttatttggtgcgtgcgtacg----ttagacaac 5080  T
Q  715 tagaaaataaaatacagacatgcactgcacttactaa 751  Q
     || |||||||||||||||||||||||||||||||||    
T  5081 aaggaaataaaatacagacatgcactgcacttactaa 5117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 517 - 614
Target Start/End: Original strand, 21634803 - 21634901
Alignment:
Q  517 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  21634803 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 21634901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 526 - 592
Target Start/End: Complemental strand, 5515604 - 5515537
Alignment:
Q  526 catttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaatt 592  Q
    ||||||| ||||||||||||||||  ||||||| || |||||||||||||||||||||| ||||||||    
T  5515604 catttctcgatttgtgcgtgtcatctttgcgcaagggccatgctaatcttctctgtatcgttccaatt 5515537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 2e-24; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 517 - 614
Target Start/End: Original strand, 32089262 - 32089360
Alignment:
Q  517 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  32089262 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 32089360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 517 - 614
Target Start/End: Original strand, 32096735 - 32096833
Alignment:
Q  517 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  32096735 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 32096833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 517 - 614
Target Start/End: Original strand, 39128489 - 39128587
Alignment:
Q  517 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  39128489 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 39128587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 517 - 614
Target Start/End: Complemental strand, 39478556 - 39478458
Alignment:
Q  517 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  39478556 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 39478458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 517 - 614
Target Start/End: Original strand, 41706626 - 41706724
Alignment:
Q  517 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  41706626 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 41706724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 517 - 614
Target Start/End: Complemental strand, 41812260 - 41812162
Alignment:
Q  517 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  41812260 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 41812162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 517 - 614
Target Start/End: Original strand, 32093019 - 32093117
Alignment:
Q  517 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||  ||||||| |||||||||||||||| ||||| || || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  32093019 aatttggaccatttctcgatttgtgcgtgtcatccttgcacaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 32093117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 517 - 614
Target Start/End: Original strand, 32087907 - 32088005
Alignment:
Q  517 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||  ||||||| |||||||||||||||| |||| ||| || ||||| |||||||||||||||| ||||||||||||| ||||||  ||||||||    
T  32087907 aatttggaccatttctcgatttgtgcgtgtcatccttgtgcaggggccatgttaatcttctctgtatcgttccaattttatcagatgtccccgaaggga 32088005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 2e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 517 - 614
Target Start/End: Original strand, 26217231 - 26217329
Alignment:
Q  517 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  26217231 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 26217329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 537 - 614
Target Start/End: Original strand, 7618947 - 7619025
Alignment:
Q  537 ttgtgcgtgtcattcttgcgcatggc-catgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||||||||  ||||||||||  ||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  7618947 ttgtgcgtgtcatctttgcgcatggatcatgctaatcttctctgtatcattccaattttatcggatgtccccgaaggga 7619025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 560 - 614
Target Start/End: Complemental strand, 11187960 - 11187906
Alignment:
Q  560 ggccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||||||||||||||||||| ||||||||||  |||| ||| |||||||||    
T  11187960 ggccatgctaatcttctctgtatcgttccaatttttccggacgtcctcgaaggga 11187906  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 536 - 604
Target Start/End: Original strand, 18871931 - 18872001
Alignment:
Q  536 tttgtgcgtgtcattcttgcgcatgg--ccatgctaatcttctctgtatcattccaattttatcggatgtc 604  Q
    ||||||||||||||  ||||||| ||  ||||||||||||| ||||||||||| ||| |||||| ||||||    
T  18871931 tttgtgcgtgtcatctttgcgcaaggggccatgctaatcttgtctgtatcatttcaactttatcagatgtc 18872001  T

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Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 517 - 614
Target Start/End: Original strand, 38044518 - 38044616
Alignment:
Q  517 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  38044518 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 38044616  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 517 - 614
Target Start/End: Complemental strand, 48838086 - 48837988
Alignment:
Q  517 aatttgggtcatttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtcatcgaaggga 614  Q
    |||||||  ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  48838086 aatttggaccatttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcggatgtccccgaaggga 48837988  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 526 - 604
Target Start/End: Complemental strand, 50152444 - 50152365
Alignment:
Q  526 catttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtc 604  Q
    ||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||||| ||||||    
T  50152444 catttctcgatttgtgcgtgtcatccttgcgcaggggccatgctaatcttctctgtatcgttccaattttatcagatgtc 50152365  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 526 - 604
Target Start/End: Complemental strand, 50904076 - 50903997
Alignment:
Q  526 catttcttgatttgtgcgtgtcattcttgcgcatgg-ccatgctaatcttctctgtatcattccaattttatcggatgtc 604  Q
    ||||||| || ||||||||||||| |||||||| || || ||||||||||||||||||| ||||||||||||||||||||    
T  50904076 catttctcgaattgtgcgtgtcatccttgcgcaggggccttgctaatcttctctgtatcgttccaattttatcggatgtc 50903997  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 526 - 603
Target Start/End: Original strand, 50916160 - 50916242
Alignment:
Q  526 catttcttgatttgtgcgtgtcattcttgcgcatgg-----ccatgctaatcttctctgtatcattccaattttatcggatgt 603  Q
    |||||||  ||||||||||||||| |||| ||| ||     |||||| |||||||||| |||| |||||||||||||||||||    
T  50916160 catttctcaatttgtgcgtgtcatccttgtgcaagggccatccatgccaatcttctctatatcgttccaattttatcggatgt 50916242  T

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Target: chr2 (Bit Score: 48; Significance: 6e-18; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 752 - 923
Target Start/End: Complemental strand, 30066980 - 30066809
Alignment:
Q  752 ttcagtttcagagttaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtgtgagcgtgtctatct 851  Q
    ||||| |||||| | ||||||||| ||  | ||||| |||||  ||||||| ||| ||||||||| |||||||| |||||||||||||| |||||||| |    
T  30066980 ttcagcttcagactcaagtaacagtgagcaagcctttaggtcatttattaatttgcagtatctggttcttgcatctgtcaatgtgtgagagtgtctatat 30066881  T
Q  852 aagcccaacgcccaataacctgatatcagtccaaaagcgtggacgtaatctagaccaaacgaaccaatgaat 923  Q
    ||||||| | ||||||| | ||| | |||| |    | ||||| ||||||||| ||||||||||| ||||||    
T  30066880 aagcccatcccccaatagcttgaaaacagttctccggtgtggaggtaatctagtccaaacgaacctatgaat 30066809  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 767 - 869
Target Start/End: Complemental strand, 30250679 - 30250577
Alignment:
Q  767 aagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtgtgagcgtgtctatctaagcccaacgcccaa 866  Q
    |||||||| |||||||||||| |||||| ||||||| |||||| |||||  ||||||||  ||||||||||||  |||||||  |||||||||| || ||    
T  30250679 aagtaacaacgaagaggccttcaggtcgtttattaatttgtagaatctgattcttgcatccgtcaatgtgtgatagtgtctaaataagcccaaccccaaa 30250580  T
Q  867 taa 869  Q
    |||    
T  30250579 taa 30250577  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 526 - 596
Target Start/End: Original strand, 32271350 - 32271421
Alignment:
Q  526 catttcttgatttgtgcgtgtcattcttgcgca-tggccatgctaatcttctctgtatcattccaattttat 596  Q
    ||||||| |||||||||||||||| ||||||||  ||||||| ||||||||| |||||| ||||||||||||    
T  32271350 catttctcgatttgtgcgtgtcatccttgcgcaggggccatgataatcttctttgtatcgttccaattttat 32271421  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 12089212 - 12089163
Alignment:
Q  34 agatgacatgaaggtgcagaacaaagaaactgaaattatcaatttggaag 83  Q
    |||| ||||||| || || |||||||||||||||||||||||||||||||    
T  12089212 agataacatgaatgtacaaaacaaagaaactgaaattatcaatttggaag 12089163  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 747 - 856
Target Start/End: Complemental strand, 30278299 - 30278190
Alignment:
Q  747 actaattcagtttcagagttaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtgtgagcgtgtc 846  Q
    |||||||| | |||||| | ||||||||  ||||||||||| || ||  ||||||| |||||| |||||  |||||||| |||||||||| |||| |||     
T  30278299 actaattcggcttcagactcaagtaacaatgaagaggccttgagatcatttattaatttgtagcatctgtttcttgcatctgtcaatgtgcgagcatgtt 30278200  T
Q  847 tatctaagcc 856  Q
    ||| ||||||    
T  30278199 tatataagcc 30278190  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 756 - 836
Target Start/End: Original strand, 30185990 - 30186070
Alignment:
Q  756 gtttcagagttaagtaacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtg 836  Q
    |||||||| | ||||| ||| ||||||||||| |||||  ||||||| ||||||||| ||| |||||| | ||||||||||    
T  30185990 gtttcagactcaagtagcagtgaagaggcctttaggtcatttattaatttgtagtatttggatcttgcttgtgtcaatgtg 30186070  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 770 - 870
Target Start/End: Complemental strand, 30789020 - 30788920
Alignment:
Q  770 taacagcgaagaggccttaaggtcgcttattaacttgtagtatctggctcttgcatttgtcaatgtgtgagcgtgtctatctaagcccaacgcccaataa 869  Q
    |||||| ||||| || || || ||| ||| ||| ||||||||||||| ||| |||| |||||||||| ||| || ||||| ||||||| || ||||||||    
T  30789020 taacagtgaagatgctttgagatcgtttaataatttgtagtatctggttctcgcatctgtcaatgtgggagagtttctatataagcccgacccccaataa 30788921  T
Q  870 c 870  Q
    |    
T  30788920 c 30788920  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 561 - 597
Target Start/End: Original strand, 7772341 - 7772377
Alignment:
Q  561 gccatgctaatcttctctgtatcattccaattttatc 597  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7772341 gccatgctaatcttctctgtatcgttccaattttatc 7772377  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 561 - 597
Target Start/End: Original strand, 7777949 - 7777985
Alignment:
Q  561 gccatgctaatcttctctgtatcattccaattttatc 597  Q
    ||||||||||||||||||||||| |||||||||||||    
T  7777949 gccatgctaatcttctctgtatcgttccaattttatc 7777985  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 603
Target Start/End: Complemental strand, 18352682 - 18352651
Alignment:
Q  572 cttctctgtatcattccaattttatcggatgt 603  Q
    ||||||||||||||||||||||||||||||||    
T  18352682 cttctctgtatcattccaattttatcggatgt 18352651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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