View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_101 (Length: 327)

Name: NF11309A_low_101
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_101
NF11309A_low_101
[»] scaffold0049 (1 HSPs)
scaffold0049 (28-323)||(58137-58423)
[»] chr1 (20 HSPs)
chr1 (38-108)||(49557087-49557157)
chr1 (37-108)||(49517016-49517087)
chr1 (37-98)||(30371104-30371165)
chr1 (34-97)||(34179922-34179985)
chr1 (34-108)||(38578473-38578547)
chr1 (45-106)||(15360842-15360903)
chr1 (37-94)||(27738233-27738290)
chr1 (37-97)||(25479538-25479598)
chr1 (37-97)||(28467360-28467420)
chr1 (41-108)||(4200175-4200242)
chr1 (37-96)||(7218127-7218186)
chr1 (37-108)||(17269196-17269267)
chr1 (37-108)||(40304107-40304178)
chr1 (70-108)||(14737791-14737829)
chr1 (39-104)||(28938052-28938117)
chr1 (37-103)||(36070201-36070267)
chr1 (70-108)||(36641821-36641859)
chr1 (39-108)||(29007771-29007840)
chr1 (37-81)||(25006087-25006131)
chr1 (71-107)||(44936677-44936713)
[»] scaffold0024 (1 HSPs)
scaffold0024 (34-108)||(27522-27596)
[»] chr7 (10 HSPs)
chr7 (37-103)||(1417215-1417281)
chr7 (34-103)||(30456500-30456569)
chr7 (50-108)||(28165037-28165095)
chr7 (70-108)||(39591553-39591591)
chr7 (38-108)||(49060486-49060556)
chr7 (71-108)||(5276170-5276207)
chr7 (32-97)||(9527138-9527203)
chr7 (34-103)||(30496655-30496724)
chr7 (37-97)||(5006562-5006622)
chr7 (40-108)||(45813236-45813304)
[»] chr4 (15 HSPs)
chr4 (34-108)||(49219085-49219159)
chr4 (32-103)||(24929444-24929515)
chr4 (37-106)||(8130122-8130191)
chr4 (40-96)||(18630638-18630694)
chr4 (37-89)||(32920453-32920505)
chr4 (44-103)||(4071833-4071892)
chr4 (40-103)||(10192235-10192298)
chr4 (37-108)||(29373940-29374011)
chr4 (50-108)||(30024646-30024704)
chr4 (70-103)||(41701527-41701560)
chr4 (37-102)||(55870394-55870459)
chr4 (71-111)||(23815313-23815353)
chr4 (37-108)||(27623581-27623655)
chr4 (43-103)||(44638232-44638292)
chr4 (37-97)||(53626733-53626793)
[»] chr6 (14 HSPs)
chr6 (37-108)||(4006660-4006731)
chr6 (69-108)||(28531626-28531665)
chr6 (34-108)||(9668035-9668109)
chr6 (37-97)||(2727909-2727969)
chr6 (71-111)||(5328917-5328957)
chr6 (29-108)||(10452405-10452484)
chr6 (37-108)||(29274282-29274353)
chr6 (38-88)||(5550098-5550148)
chr6 (70-108)||(24836285-24836323)
chr6 (70-103)||(5551413-5551446)
chr6 (37-97)||(281901-281961)
chr6 (37-109)||(1402941-1403013)
chr6 (71-111)||(2027493-2027533)
chr6 (37-97)||(11340678-11340738)
[»] chr3 (15 HSPs)
chr3 (37-108)||(24235736-24235807)
chr3 (39-108)||(48364934-48365003)
chr3 (39-108)||(48397592-48397661)
chr3 (37-108)||(10101529-10101600)
chr3 (37-108)||(10212454-10212525)
chr3 (42-108)||(20192664-20192730)
chr3 (38-104)||(22214735-22214801)
chr3 (36-108)||(48323767-48323839)
chr3 (71-111)||(54775071-54775111)
chr3 (37-108)||(24887336-24887407)
chr3 (36-108)||(1395617-1395689)
chr3 (47-95)||(26599137-26599185)
chr3 (40-108)||(30956682-30956750)
chr3 (40-108)||(30972494-30972562)
chr3 (60-108)||(39971265-39971313)
[»] chr8 (9 HSPs)
chr8 (34-108)||(38561672-38561746)
chr8 (37-89)||(6509356-6509408)
chr8 (41-101)||(34551073-34551133)
chr8 (37-93)||(34770853-34770909)
chr8 (37-108)||(12361138-12361209)
chr8 (37-108)||(42597347-42597418)
chr8 (71-108)||(26820145-26820182)
chr8 (71-108)||(40728505-40728542)
chr8 (71-107)||(29699201-29699237)
[»] chr2 (10 HSPs)
chr2 (37-94)||(11513858-11513915)
chr2 (37-108)||(10143118-10143189)
chr2 (34-108)||(43199360-43199434)
chr2 (71-111)||(43199186-43199226)
chr2 (37-108)||(39567849-39567920)
chr2 (41-103)||(10285304-10285366)
chr2 (34-108)||(28803556-28803630)
chr2 (71-108)||(3458603-3458640)
chr2 (37-93)||(6993777-6993833)
chr2 (40-108)||(11344340-11344408)
[»] chr5 (9 HSPs)
chr5 (36-107)||(37690689-37690760)
chr5 (37-107)||(37526252-37526322)
chr5 (37-107)||(37588413-37588483)
chr5 (70-145)||(21782655-21782727)
chr5 (37-104)||(39823174-39823241)
chr5 (43-103)||(42181151-42181211)
chr5 (37-108)||(18704089-18704159)
chr5 (41-103)||(14295457-14295519)
chr5 (34-103)||(4855649-4855718)
[»] scaffold0508 (1 HSPs)
scaffold0508 (37-108)||(9828-9899)
[»] scaffold0053 (1 HSPs)
scaffold0053 (37-103)||(20130-20196)
[»] scaffold0549 (2 HSPs)
scaffold0549 (37-97)||(1777-1837)
scaffold0549 (37-97)||(3867-3927)


Alignment Details
Target: scaffold0049 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 28 - 323
Target Start/End: Original strand, 58137 - 58423
Alignment:
Q  28 cgagagagtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataacttaaactctataaacacataat 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||    
T  58137 cgagagagtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataacttaaa---------cacataat 58227  T
Q  128 taagttgtatttccaaacgagcctaacacagttttctcaaatgcttttcaagatttacaatcctctaatcgaccaaaaagtcacaaagctgccttagctt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58228 taagttgtatttccaaacgagcctaacacagttttctcaaatgcttttcaagatttacaatcctctaatcgaccaaaaagtcacaaagctgccttagctt 58327  T
Q  228 ttgcttcaagcctaagctgcatctgcttactaattctgggatttggctttcttctctggtggagacaaagatataacaagcaaatattcttcgaca 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  58328 ttgcttcaagcctaagctgcatctgcttactaattctgggatttggctttcttctctggtggagacaaagatataacaagcaaatattctttgaca 58423  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 49557157 - 49557087
Alignment:
Q  38 tatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||||||| || || |||||||||| ||||||| ||||||||||||||| ||||||||||    
T  49557157 tatgaaaacaacttatagcttaaatgaatactatttaactttattttatcttttgttatagaaataactta 49557087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 49517087 - 49517016
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||| |||||||| || || || || |||||||||||| ||||||||||||||| ||||||||||    
T  49517087 ttatgaaaacagcttatagcttaaatgaaaacaatttgactttattttatcttttgttatagaaataactta 49517016  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 30371165 - 30371104
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatat 98  Q
    |||||||||||||||||||| ||||| || || |||||| ||||| ||||||||||||||||    
T  30371165 ttatgaaaacaacttatagcttatatgaaaacaatttgagtttattttatcttttgttatat 30371104  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 34179922 - 34179985
Alignment:
Q  34 agtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttata 97  Q
    ||||||||||||||  ||||||| || ||||| || |||||||||||| |||||||||||||||    
T  34179922 agtttatgaaaacagtttatagcttagattaaaacaatttgactttattttatcttttgttata 34179985  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 38578547 - 38578473
Alignment:
Q  34 agtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||| |||||||||||||| ||||  || |  |||| ||||||||||||||||||||||| ||||| ||||    
T  38578547 agtttatgtaaacaacttatagcttatacaaaaataatttaactttatgttatcttttgttatagaaatagctta 38578473  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 106
Target Start/End: Complemental strand, 15360903 - 15360842
Alignment:
Q  45 acaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataact 106  Q
    |||||||||||| ||||| || ||  ||||||||||| ||||||||||||||| ||||||||    
T  15360903 acaacttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaataact 15360842  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 27738233 - 27738290
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgtt 94  Q
    |||||||||||| ||||||| ||||| || || |||||||||||| ||||||||||||    
T  27738233 ttatgaaaacaaattatagcttatatgaaaacaatttgactttattttatcttttgtt 27738290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 25479598 - 25479538
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttata 97  Q
    |||||||||||||||||||| ||||| || || ||||||| |||| |||||||| ||||||    
T  25479598 ttatgaaaacaacttatagcctatatgaagacaatttgacgttattttatctttggttata 25479538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 28467360 - 28467420
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttata 97  Q
    ||||||||||||||| |||| ||||| || |  |||||||||||| |||||||||||||||    
T  28467360 ttatgaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgttata 28467420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 4200242 - 4200175
Alignment:
Q  41 gaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||  |||||| ||||| || || | |||||||||| ||||||||||||||| ||||||||||    
T  4200242 gaaaacaatatatagcttatatgaaaacaacttgactttattttatcttttgttataaaaataactta 4200175  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 7218127 - 7218186
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttat 96  Q
    |||||||||||||||||||| ||||| || || |||||||||||| ||| ||||| ||||    
T  7218127 ttatgaaaacaacttatagcttatatgaaaacaatttgactttattttaccttttattat 7218186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 17269267 - 17269196
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||||| || ||||| || || |||||||||||| ||  |||||||| || ||||||||||    
T  17269267 ttatgaaaacaacttattgcttatatgaaaacaatttgactttattttcacttttgttctagaaataactta 17269196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 40304107 - 40304178
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||| |||||| | ||||| || || || ||| ||||| ||||||||||||||||||||| ||||    
T  40304107 ttatgaaaacagcttataacttatatgaaaacaatgtgattttattttatcttttgttatataaatagctta 40304178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 14737791 - 14737829
Alignment:
Q  70 atttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  14737791 atttgactttattttatcttttgttatagaaataactta 14737829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 28938117 - 28938052
Alignment:
Q  39 atgaaaacaacttatagcgtatattaatactatttgactttatgttatc-ttttgttatataaataa 104  Q
    |||||||||||||||||||||||| || |  ||||||| |||||||||| |||||||||| ||||||    
T  28938117 atgaaaacaacttatagcgtatatgaaaatgatttgac-ttatgttatctttttgttataaaaataa 28938052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 36070267 - 36070201
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaata 103  Q
    |||||||||||||||||||| |||   || || |||| ||||||| ||||||||||||||| |||||    
T  36070267 ttatgaaaacaacttatagcttatccgaagacaatttaactttattttatcttttgttataaaaata 36070201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 108
Target Start/End: Complemental strand, 36641859 - 36641821
Alignment:
Q  70 atttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  36641859 atttgactttattttatcttttgttatagaaataactta 36641821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 29007771 - 29007840
Alignment:
Q  39 atgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||||||||||||| ||||| || |   ||||||||||  || |||||||||||| ||||||||||    
T  29007771 atgaaaacaacttatagcttatatgaaaatagtttgactttaatttttcttttgttatagaaataactta 29007840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 25006087 - 25006131
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttat 81  Q
    |||||||||||||||||||| ||||| || || ||||||||||||    
T  25006087 ttatgaaaacaacttatagcttatatgaaaacaatttgactttat 25006131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 44936677 - 44936713
Alignment:
Q  71 tttgactttatgttatcttttgttatataaataactt 107  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  44936677 tttgactttatcttatcttttgttatagaaataactt 44936713  T

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Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 27596 - 27522
Alignment:
Q  34 agtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||||||||||  ||||| || || |||||||||||| ||||||| ||||||| ||||||||||    
T  27596 agtttatgaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttatagaaataactta 27522  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 1417281 - 1417215
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaata 103  Q
    ||||||||||||||||| || ||||| || || |||||||||||| |||||||||||||||||||||    
T  1417281 ttatgaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttatataaata 1417215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 30456500 - 30456569
Alignment:
Q  34 agtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaata 103  Q
    ||||||||||||| ||||||| | ||||| || || |||||||||||| |||||||||||| || |||||    
T  30456500 agtttatgaaaaccacttataacttatatgaaaacaatttgactttattttatcttttgttttagaaata 30456569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 28165095 - 28165037
Alignment:
Q  50 ttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||| |||||||| || ||||||||| || ||||||||||||||| ||| ||||||    
T  28165095 ttatagcttatattaaaacaatttgacttcattttatcttttgttatagaaagaactta 28165037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 39591553 - 39591591
Alignment:
Q  70 atttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  39591553 atttgactttattttatcttttgttatagaaataactta 39591591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 49060556 - 49060486
Alignment:
Q  38 tatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||| |||||||||| ||||| || |  |||||||||||| |||| |||||||||| ||||| ||||    
T  49060556 tatgaaaataacttatagcttatataaaaataatttgactttattttattttttgttatagaaatagctta 49060486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 5276207 - 5276170
Alignment:
Q  71 tttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  5276207 tttgactttatgttatcttttgttataaaaatagctta 5276170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 9527138 - 9527203
Alignment:
Q  32 agagtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttata 97  Q
    |||| |||||||||||||||||||  ||||| || ||  |||||||||||  ||||||||||||||    
T  9527138 agagcttatgaaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgttata 9527203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 30496724 - 30496655
Alignment:
Q  34 agtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaata 103  Q
    |||||||||||||||| |||||  ||||  || || |||||||||||| |||| |||||||||| |||||    
T  30496724 agtttatgaaaacaacctataggttatacgaaaacaatttgactttattttatattttgttatagaaata 30496655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 5006562 - 5006622
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttata 97  Q
    |||||||||||| ||||| | ||||| || ||  ||||||||||| |||||||||||||||    
T  5006562 ttatgaaaacaatttataccttatatgaaaacagtttgactttattttatcttttgttata 5006622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 45813236 - 45813304
Alignment:
Q  40 tgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||||  ||||| || || | |||||||||| |||||||||| |||| ||||| ||||    
T  45813236 tgaaaacaacttatagattatatgaaaacaagttgactttattttatcttttggtatagaaatagctta 45813304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 49219159 - 49219085
Alignment:
Q  34 agtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||||||||||| ||||| || |  |||||||||||| |||| |||||||||| ||||||||||    
T  49219159 agtttatgaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttatagaaataactta 49219085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 24929515 - 24929444
Alignment:
Q  32 agagtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaata 103  Q
    ||||||||||||||||||||||||| | ||| || ||  || |||||||| ||||||||||||||| |||||    
T  24929515 agagtttatgaaaacaacttatagcttttatgaaaacagttagactttattttatcttttgttatagaaata 24929444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 8130191 - 8130122
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataact 106  Q
    |||||||||||  ||||||| ||||| || |  |||||||||||||||||||||||||||| ||| ||||    
T  8130191 ttatgaaaacagtttatagcttatatgaaaataatttgactttatgttatcttttgttatagaaagaact 8130122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 18630694 - 18630638
Alignment:
Q  40 tgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttat 96  Q
    ||||||||||||||||| ||||| || || | |||||||||| ||||||||||||||    
T  18630694 tgaaaacaacttatagcttatatgaaaaccaattgactttattttatcttttgttat 18630638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 32920453 - 32920505
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatctt 89  Q
    |||||||||||||||||||| | |||||| || |||||||||||| |||||||    
T  32920453 ttatgaaaacaacttatagcttctattaaaacgatttgactttattttatctt 32920505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 4071892 - 4071833
Alignment:
Q  44 aacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaata 103  Q
    ||||||||||||| ||||| || |  |||||||||||| ||||||||||||||| |||||    
T  4071892 aacaacttatagcttatatgaaaataatttgactttattttatcttttgttatagaaata 4071833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 10192298 - 10192235
Alignment:
Q  40 tgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaata 103  Q
    ||||||||||||||| | ||||| || || ||||||||||||  |||||||||||||| |||||    
T  10192298 tgaaaacaacttataacttatatgaaaacaatttgactttattctatcttttgttataaaaata 10192235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 29373940 - 29374011
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||||||| ||||||| ||||| |||||  |||||| |||| ||||||| ||||||| ||||| ||||    
T  29373940 ttatgaaaacaaattatagcttatatgaatacattttgacattattttatcttctgttatagaaatagctta 29374011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 30024704 - 30024646
Alignment:
Q  50 ttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||| ||||| || || |||| ||||||| ||||||||||||||| ||||||||||    
T  30024704 ttatagcttatatgaaaacaattttactttattttatcttttgttatagaaataactta 30024646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Original strand, 41701527 - 41701560
Alignment:
Q  70 atttgactttatgttatcttttgttatataaata 103  Q
    |||||||||||| |||||||||||||||||||||    
T  41701527 atttgactttattttatcttttgttatataaata 41701560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 102
Target Start/End: Original strand, 55870394 - 55870459
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaat 102  Q
    |||||||||||||||||||| ||| | || ||  ||||||||||| | ||||||||||||| ||||    
T  55870394 ttatgaaaacaacttatagcttatgtgaaaacagtttgactttatttgatcttttgttataaaaat 55870459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 23815353 - 23815313
Alignment:
Q  71 tttgactttatgttatcttttgttatataaataacttaaac 111  Q
    |||||| |||| ||||||||||||||| |||||||||||||    
T  23815353 tttgacattattttatcttttgttatagaaataacttaaac 23815313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 27623655 - 27623581
Alignment:
Q  37 ttatgaaaacaactt---atagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||||||||||   ||||| |||||||| |   ||||||||||| ||||||||||||||| ||||| ||||    
T  27623655 ttatgaaaacaacttcttatagcttatattaaaatagtttgactttattttatcttttgttatacaaatatctta 27623581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 44638232 - 44638292
Alignment:
Q  43 aaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaata 103  Q
    |||||||||||||| ||||| |||   |||| ||||||| | |||||||||||||||||||    
T  44638232 aaacaacttatagcttatatgaatgtaatttaactttatataatcttttgttatataaata 44638292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 53626793 - 53626733
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttata 97  Q
    ||||||||||| |||||||| ||||| || ||  ||||| ||||| |||||||||||||||    
T  53626793 ttatgaaaacagcttatagcttatatgaaaacattttgaatttattttatcttttgttata 53626733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 4006731 - 4006660
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||||||||||||||| ||||| || || |||||||||||| ||||| ||||||||| ||||| ||||    
T  4006731 ttatgaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttatagaaatatctta 4006660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 108
Target Start/End: Original strand, 28531626 - 28531665
Alignment:
Q  69 tatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  28531626 tatttgactttattttatcttttgttatataaataactta 28531665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 9668035 - 9668109
Alignment:
Q  34 agtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||| || |||| ||||| || || ||| |||| ||||||||||||||||||| ||||| ||||    
T  9668035 agtttatgaaaacaaattgtagcttatatgaaaacaattcgactctatgttatcttttgttatacaaatagctta 9668109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 2727909 - 2727969
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttata 97  Q
    |||||||||||||||||||| ||||| ||||| |||||| |||   |||||||||||||||    
T  2727909 ttatgaaaacaacttatagcttatatcaatacaatttgatttttgtttatcttttgttata 2727969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 5328957 - 5328917
Alignment:
Q  71 tttgactttatgttatcttttgttatataaataacttaaac 111  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  5328957 tttgactttattttatcttttgttatagaaataacttaaac 5328917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 10452405 - 10452484
Alignment:
Q  29 gagagagtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||| |||||||||||||| ||||| || |   ||||| ||||| |||| |||||||||| ||||| ||||    
T  10452405 gagagagtttatggaaacaacttatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagctta 10452484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 29274282 - 29274353
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||||||  ||||||| ||||| || || |||||||||||| |||||||||| |||| ||||| ||||    
T  29274282 ttatgaaaacagtttatagcttatatgaaaacaatttgactttattttatcttttgctatagaaatagctta 29274353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 5550148 - 5550098
Alignment:
Q  38 tatgaaaacaacttatagcgtatattaatactatttgactttatgttatct 88  Q
    |||||||||| |||||||| ||||| || || |||||||||||||||||||    
T  5550148 tatgaaaacagcttatagcttatatgaaaacaatttgactttatgttatct 5550098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 24836285 - 24836323
Alignment:
Q  70 atttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  24836285 atttgactttattttatcttttgttatagaaataactta 24836323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 103
Target Start/End: Complemental strand, 5551446 - 5551413
Alignment:
Q  70 atttgactttatgttatcttttgttatataaata 103  Q
    |||||||||||| |||||||||||||||||||||    
T  5551446 atttgactttattttatcttttgttatataaata 5551413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 281901 - 281961
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttata 97  Q
    ||||||| ||| |||||||| ||||| || || | |||||||||| |||||||||||||||    
T  281901 ttatgaacacagcttatagcttatatgaaaacaagttgactttattttatcttttgttata 281961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 1403013 - 1402941
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataacttaa 109  Q
    |||||||||||| ||||||| ||||| || |   ||| ||||||| ||||||||||||||| ||||| |||||    
T  1403013 ttatgaaaacaatttatagcttatatgaaaatagtttaactttattttatcttttgttatagaaatagcttaa 1402941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 111
Target Start/End: Original strand, 2027493 - 2027533
Alignment:
Q  71 tttgactttatgttatcttttgttatataaataacttaaac 111  Q
    ||||||||||| ||||||||||||||| ||||| |||||||    
T  2027493 tttgactttattttatcttttgttataaaaatagcttaaac 2027533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 11340678 - 11340738
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttata 97  Q
    |||||||| ||||||||||||||||| || |  | || ||||||| |||||||||||||||    
T  11340678 ttatgaaaccaacttatagcgtatatgaaaataaattaactttattttatcttttgttata 11340738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 24235736 - 24235807
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||||||||||||||| |||||| | |   ||||||||||| ||||||||||||||| ||||||||||    
T  24235736 ttatgaaaacaacttatagcttatattcaaatagtttgactttatattatcttttgttatagaaataactta 24235807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Original strand, 48364934 - 48365003
Alignment:
Q  39 atgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||| ||||| || || || |||||||||||| ||||||||||||||  ||||||||||    
T  48364934 atgaaaacaacttatggcgtaaatgaaaacaatttgactttattttatcttttgttatcgaaataactta 48365003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 48397661 - 48397592
Alignment:
Q  39 atgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||||||||||||| || || || || |||||||||||| ||||||||| ||||| ||||||||||    
T  48397661 atgaaaacaacttatagcttaaataaaaacaatttgactttattttatcttttattataaaaataactta 48397592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 10101529 - 10101600
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||| || | ||||| || || |||| ||||||| ||||||||||||||| ||||||||||    
T  10101529 ttatgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttatagaaataactta 10101600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 10212454 - 10212525
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||| || | ||||| || || |||| ||||||| ||||||||||||||| ||||||||||    
T  10212454 ttatgaaaacaacttttatcttatatgaaaacaatttaactttattttatcttttgttatagaaataactta 10212525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 20192664 - 20192730
Alignment:
Q  42 aaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||| |||||||  ||||| || ||| ||||||||||| ||||||||||||||||||||| ||||    
T  20192664 aaaacagcttatagattatatgaaaactgtttgactttattttatcttttgttatataaatagctta 20192730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 22214735 - 22214801
Alignment:
Q  38 tatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataa 104  Q
    ||||||||||||||||||  ||||| ||||| |||| ||||||| ||||| ||||||||| ||||||    
T  22214735 tatgaaaacaacttataggttatatgaatacaatttcactttattttatcctttgttatagaaataa 22214801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 48323839 - 48323767
Alignment:
Q  36 tttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||| ||||||| || |  || || |||||||||||| ||||||||| ||||| ||||||||||    
T  48323839 tttatgaaaacaatttatagcttacagaaaaacaatttgactttatattatcttttattatagaaataactta 48323767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 54775111 - 54775071
Alignment:
Q  71 tttgactttatgttatcttttgttatataaataacttaaac 111  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  54775111 tttgactttattttatcttttgttatagaaataacttaaac 54775071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 24887336 - 24887407
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||| ||| |||| ||||| |||||  ||||||||||| |||||| |||||||| ||||| ||||    
T  24887336 ttatgaaaacagcttttagcttatatgaatacagtttgactttattttatctattgttatagaaatagctta 24887407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 1395689 - 1395617
Alignment:
Q  36 tttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||  | ||||| ||||| || |  |||||||||||| ||||||||||||||| ||||| ||||    
T  1395689 tttatgaaaacagttcatagcttatatgaaaataatttgactttattttatcttttgttatagaaatagctta 1395617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 26599185 - 26599137
Alignment:
Q  47 aacttatagcgtatattaatactatttgactttatgttatcttttgtta 95  Q
    |||||||| | ||||| || ||||||||||||||| |||||||||||||    
T  26599185 aacttataccttatatgaaaactatttgactttattttatcttttgtta 26599137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 30956682 - 30956750
Alignment:
Q  40 tgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||||| ||||  || || |||| ||||||| |||||||||| |||| ||||| ||||    
T  30956682 tgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagctta 30956750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 30972494 - 30972562
Alignment:
Q  40 tgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||||| ||||  || || |||| ||||||| |||||||||| |||| ||||| ||||    
T  30972494 tgaaaacaacttatagcctatacaaaaacaatttaactttattttatcttttgctatagaaatagctta 30972562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 39971313 - 39971265
Alignment:
Q  60 tattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||| || ||||| |||||| |||||||||||||||||| |||||||    
T  39971313 tattaaaacaatttggctttattttatcttttgttatataagtaactta 39971265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 38561746 - 38561672
Alignment:
Q  34 agtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||||||||||  || || || |   ||||||||||| ||||||||||||||||||||||||||    
T  38561746 agtttatgaaaacaacttatagtatagataaaaatagtttgactttattttatcttttgttatataaataactta 38561672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 6509356 - 6509408
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatctt 89  Q
    ||||||||||| |||||||| ||||| ||||| |||||||||||| |||||||    
T  6509356 ttatgaaaacagcttatagcttatataaatacaatttgactttattttatctt 6509408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 101
Target Start/End: Complemental strand, 34551133 - 34551073
Alignment:
Q  41 gaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaa 101  Q
    |||||||||||||| | || || || || ||||||||| ||||||||||||||||||||||    
T  34551133 gaaaacaacttataacttaaatgaaaacaatttgacttgatgttatcttttgttatataaa 34551073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 34770909 - 34770853
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgt 93  Q
    |||||||||||||||||||| || || || || |||||||||||| |||||||||||    
T  34770909 ttatgaaaacaacttatagcttaaatgaaaacaatttgactttattttatcttttgt 34770853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 12361209 - 12361138
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||| |||||||| ||||| || || ||||||||| || ||||||||  ||||| ||||||||||    
T  12361209 ttatgaaaacagcttatagcttatatgaaaacaatttgacttcattttatctttatttatagaaataactta 12361138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 42597418 - 42597347
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||||||||||||||| |  || || || |||| ||||||| ||||||||||||||| ||||| ||||    
T  42597418 ttatgaaaacaacttatagcttgcatgaaaacaattttactttattttatcttttgttatagaaatagctta 42597347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 26820182 - 26820145
Alignment:
Q  71 tttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  26820182 tttgactttattttatcttttgttatagaaataactta 26820145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 40728505 - 40728542
Alignment:
Q  71 tttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  40728505 tttgactttattttatcttttgttatagaaataactta 40728542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 107
Target Start/End: Complemental strand, 29699237 - 29699201
Alignment:
Q  71 tttgactttatgttatcttttgttatataaataactt 107  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  29699237 tttgactttattttatcttttgttatagaaataactt 29699201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 11513915 - 11513858
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgtt 94  Q
    |||||||||||||||||||| ||||| || || |||||||||||| ||||||||||||    
T  11513915 ttatgaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 10143189 - 10143118
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||| |||||||||| ||||| || ||  |||||||| || ||||||||||||||| ||||||||||    
T  10143189 ttatgaaaaaaacttatagcttatataaaaacagtttgacttaattttatcttttgttatagaaataactta 10143118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 43199434 - 43199360
Alignment:
Q  34 agtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||||||||||||| ||||  || |  |||| ||||||| |||||||||||| || ||||||||||    
T  43199434 agtttatgaaaacaacttatagcttatacgaagataatttaactttattttatcttttgttgtagaaataactta 43199360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 43199226 - 43199186
Alignment:
Q  71 tttgactttatgttatcttttgttatataaataacttaaac 111  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  43199226 tttgactttattttatcttttgttatataaataatttaaac 43199186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 39567920 - 39567849
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||| |||||||| ||| || | || |||| ||||||| ||||||||||||||| ||||| ||||    
T  39567920 ttatgaaaacagcttatagcttatcttgaaacaatttaactttattttatcttttgttatagaaatatctta 39567849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 10285366 - 10285304
Alignment:
Q  41 gaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaata 103  Q
    |||||||||||||||| ||||| ||  ||||||||| |||| ||| ||||||||||| |||||    
T  10285366 gaaaacaacttatagcttatataaaacctatttgacattattttaacttttgttatagaaata 10285304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 28803556 - 28803630
Alignment:
Q  34 agtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||| ||||||||||| |||| ||||| ||  |  ||||||||||| ||||||||||||||  ||||||||||    
T  28803556 agtttaagaaaacaacttgtagcttatatgaaatcagtttgactttattttatcttttgttatcgaaataactta 28803630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 3458640 - 3458603
Alignment:
Q  71 tttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  3458640 tttgactttattttatcttttgttataaaaataactta 3458603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 93
Target Start/End: Original strand, 6993777 - 6993833
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgt 93  Q
    ||||||||||||| |||||| ||||| ||||  ||||||| |||| |||||||||||    
T  6993777 ttatgaaaacaacctatagcttatatgaatataatttgaccttattttatcttttgt 6993833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 11344340 - 11344408
Alignment:
Q  40 tgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||| ||||||| | ||| || || |||||||||| | ||||||||||||||| ||||| ||||    
T  11344340 tgaaaacaatttatagcttgtatgaaaacaatttgactttcttttatcttttgttatagaaatatctta 11344408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 37690689 - 37690760
Alignment:
Q  36 tttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactt 107  Q
    ||||||||||||||||||||| ||||| || ||| ||||| || || ||||||||| ||||| |||||||||    
T  37690689 tttatgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattatagaaataactt 37690760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 37526252 - 37526322
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactt 107  Q
    |||||||||||||||||||| ||||| || ||| ||||| || || ||||||||| ||||| |||||||||    
T  37526252 ttatgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattatagaaataactt 37526322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 107
Target Start/End: Original strand, 37588413 - 37588483
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactt 107  Q
    |||||||||||||||||||| ||||| || ||| ||||| || || ||||||||| ||||| |||||||||    
T  37588413 ttatgaaaacaacttatagcttatatgaaaactttttgatttgattttatcttttattatagaaataactt 37588483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 21782655 - 21782727
Alignment:
Q  70 atttgactttatgttatcttttgttatataaataacttaaactctataaacacataattaagttgtatttccaaac 145  Q
    |||||||||||| ||| ||||||||||| ||||| |||||||   |||||||| |||||||||||| | |||||||    
T  21782655 atttgactttattttagcttttgttatagaaatagcttaaac---ataaacacttaattaagttgtttatccaaac 21782727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Original strand, 39823174 - 39823241
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatacta-tttgactttatgttatcttttgttatataaataa 104  Q
    ||||||||||||||| |||| ||||| || | || ||||||||||| ||||||||||||||||||||||    
T  39823174 ttatgaaaacaacttgtagcttatatgaa-agtagtttgactttattttatcttttgttatataaataa 39823241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 42181151 - 42181211
Alignment:
Q  43 aaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaata 103  Q
    |||||||||||||| ||||| || || |||||||||| | ||||||||||||||| |||||    
T  42181151 aaacaacttatagcttatatgaaaaccatttgactttgttttatcttttgttataaaaata 42181211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 18704089 - 18704159
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    |||||||||||||||||||| ||||| || |    |||||||||| ||||||||||||||| ||||||||||    
T  18704089 ttatgaaaacaacttatagcttatataaaaatagcttgactttat-ttatcttttgttatagaaataactta 18704159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 14295519 - 14295457
Alignment:
Q  41 gaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaata 103  Q
    ||||||| |||||||| ||||| || ||  ||||||||||| ||||||||||||||| |||||    
T  14295519 gaaaacagcttatagcttatatgaaaacagtttgactttattttatcttttgttatagaaata 14295457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 4855718 - 4855649
Alignment:
Q  34 agtttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaata 103  Q
    ||||||||||||||||||||| | ||||| |  || |||| ||||||| |||| |||||||||| |||||    
T  4855718 agtttatgaaaacaacttataacttatatgataacaatttaactttattttattttttgttataaaaata 4855649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 9828 - 9899
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaataactta 108  Q
    ||||||||||||| |||| | ||||| || ||| |||||||| || |||| |||||||||| ||||||||||    
T  9828 ttatgaaaacaacctataacttatatgaaaactttttgacttaattttattttttgttatagaaataactta 9899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 20196 - 20130
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttatataaata 103  Q
    |||||||||||||| ||||| ||||| |  ||| ||||||||||| |||||||| |||||| |||||    
T  20196 ttatgaaaacaactaatagcttatatgataactgtttgactttattttatctttggttatagaaata 20130  T

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Target: scaffold0549 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 1777 - 1837
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttata 97  Q
    |||||||| ||||||||||||||||| || |  | || ||||||| |||||||||||||||    
T  1777 ttatgaaaccaacttatagcgtatatgaaaataaattaactttattttatcttttgttata 1837  T

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Target: scaffold0549; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 3867 - 3927
Alignment:
Q  37 ttatgaaaacaacttatagcgtatattaatactatttgactttatgttatcttttgttata 97  Q
    |||||||| ||||||||||||||||| || |  | || ||||||| |||||||||||||||    
T  3867 ttatgaaaccaacttatagcgtatatgaaaataaattaactttattttatcttttgttata 3927  T

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