View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_104 (Length: 325)

Name: NF11309A_low_104
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_104
NF11309A_low_104
[»] chr1 (16 HSPs)
chr1 (7-313)||(13244622-13244928)
chr1 (109-313)||(12963976-12964180)
chr1 (101-313)||(30368209-30368421)
chr1 (110-300)||(13271474-13271664)
chr1 (33-313)||(13100812-13101091)
chr1 (26-313)||(13080966-13081253)
chr1 (101-313)||(13094278-13094490)
chr1 (101-313)||(13070277-13070489)
chr1 (26-313)||(13085911-13086198)
chr1 (31-313)||(13007009-13007291)
chr1 (101-313)||(13129707-13129919)
chr1 (31-313)||(13204268-13204550)
chr1 (101-311)||(13161400-13161610)
chr1 (109-313)||(19279269-19279473)
chr1 (27-313)||(13065314-13065600)
chr1 (110-169)||(13010661-13010720)
[»] chr7 (1 HSPs)
chr7 (155-313)||(12164206-12164364)
[»] chr6 (5 HSPs)
chr6 (226-312)||(377572-377658)
chr6 (226-309)||(341859-341942)
chr6 (141-232)||(31380253-31380344)
chr6 (227-312)||(346845-346930)
chr6 (227-312)||(355504-355589)
[»] chr8 (1 HSPs)
chr8 (284-313)||(36668187-36668216)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 13244928 - 13244622
Alignment:
Q  7 catcacacttgcaactttgttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttaca 106  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||    
T  13244928 catcacacttacaactttgttatatcaaatgcatcttttactgacttcgacctttaagccgtgtttcatgcgaacgacaatagaagttctcagcgttaca 13244829  T
Q  107 gggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctag 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  13244828 gggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacgaagctaagatctttcccaatacaacttctag 13244729  T
Q  207 gacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctcc 306  Q
    |||||||||||||||||||||||||||||||||| |||| || ||| ||||||||| | ||||||||||||||||||||||||||||||||||| |||||    
T  13244728 gacctgcattgaaagctatgaacttgtaagacggtacatttataatccctcctctagctgatatccatctttcaggcttaaattccaagcaatcatctcc 13244629  T
Q  307 ccatatt 313  Q
    |||||||    
T  13244628 ccatatt 13244622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 109 - 313
Target Start/End: Complemental strand, 12964180 - 12963976
Alignment:
Q  109 gtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 208  Q
    ||||||||||||||| | |||| |||||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12964180 gtgaccttccaccacttctatgtgaaacttccacaacacattagcagcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 12964081  T
Q  209 cctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctcccc 308  Q
    ||||||||||| ||||||||||| ||||| || || |||| |||  ||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  12964080 cctgcattgaatgctatgaacttataagatggcacttgtataatttctcctctatttgatatccatctttcaggcttaaattccaagcaatcttctcccc 12963981  T
Q  309 atatt 313  Q
    |||||    
T  12963980 atatt 12963976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 101 - 313
Target Start/End: Complemental strand, 30368421 - 30368209
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||| | |||||||||||| ||||||||||| || |||| |||||| || |||||||    
T  30368421 gttacagggtgaccttccacgacctgtatgtgaaacttccataacaaggcagctgcaaccatcttcatttgaacgaaactaagatctttacccatacaac 30368322  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatc 300  Q
    ||||||| |||| |||||||||||||||||||||||| || ||||||| ||||  ||||||  | |||| |||||| |||||||||||||||| ||||||    
T  30368321 ttctaggtcctgtattgaaagctatgaacttgtaagatggtacatgtataatgtgtcctctctctgatacccatctctcaggcttaaattccatgcaatc 30368222  T
Q  301 ttctccccatatt 313  Q
    |||||||||||||    
T  30368221 ttctccccatatt 30368209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 110 - 300
Target Start/End: Original strand, 13271474 - 13271664
Alignment:
Q  110 tgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggac 209  Q
    |||||||||||||| |||||| ||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||    
T  13271474 tgaccttccaccacatgtatgtgaaacttccataatacagaagctgcaaccattttcatttgaataaagctaatatctttcccaagacagcttctaggac 13271573  T
Q  210 ctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatc 300  Q
    |||||||||| ||||||||||||||||| || ||||||| |||   |||| || | ||||||||||| ||||||||||| |||||||||||    
T  13271574 ctgcattgaatgctatgaacttgtaagatggtacatgtataatttgtcctttatctgatatccatctctcaggcttaaactccaagcaatc 13271664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 33 - 313
Target Start/End: Original strand, 13100812 - 13101091
Alignment:
Q  33 aaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatgcg 132  Q
    |||||||||||||| ||| || |||||| ||||| ||||||||| ||||  ||| ||||    || | |||| ||||||||||||||||||||||||| |    
T  13100812 aaatgcatcttttagtgactttgaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgaccttccaccacctgtatgtg 13100911  T
Q  133 aaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttg 232  Q
    |||||||  |||||||| |||||| ||||| ||||||||||  ||||||||||| || || |||||||||||||| |||| |||||||||||||||||||    
T  13100912 aaacttcggtaacaaagcagctgcgaccatcttcatttgaatgaagctaatatccttacccatacaacttctaggtcctg-attgaaagctatgaacttg 13101010  T
Q  233 taagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 313  Q
    ||||| || ||||||| ||||  ||||||  | || | |||||| |||||||||||||||| ||| |||||||||||||||    
T  13101011 taagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctccccatatt 13101091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 26 - 313
Target Start/End: Complemental strand, 13081253 - 13080966
Alignment:
Q  26 ttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacct 125  Q
    ||||||||||||||||||||||  |||| |||||| ||||| |||| ||||||||||  |||||||   ||  |  |||  | |||||||||||||||||    
T  13081253 ttatatcaaatgcatcttttacgaattttgaccttaaagccatgttccatgcgaaggagaatagaaaccctaggaattattgagtgaccttccaccacct 13081154  T
Q  126 gtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctat 225  Q
    | ||| |||||||  |||| |  | ||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||| ||||||||||| || |||||    
T  13081153 gaatgtgaaacttaaataaaactgcagctgcaaccattttcatttgaagaaaactaatatctttcccaagacagcttcttggacctgcattaaacgctat 13081054  T
Q  226 gaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 313  Q
    |||||| |||||||| || |||| |||   ||||||| | ||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  13081053 gaacttataagacggcacttgtataatttgtcctctatctgatatccatctctcaggcttaaactccaagcaatcctctccccatatt 13080966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 101 - 313
Target Start/End: Original strand, 13094278 - 13094490
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||| ||||||||||  || ||||||||||| || ||||||     
T  13094278 gttacagggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaatatctttacctatacaaa 13094377  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatc 300  Q
    |||| || ||||  ||||||||||||||||||||||| || ||||||| |||  |||| ||  | ||||||||||| |||||||||||||||| ||| ||    
T  13094378 ttctgggtcctgtgttgaaagctatgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtc 13094477  T
Q  301 ttctccccatatt 313  Q
    |||||||||||||    
T  13094478 ttctccccatatt 13094490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 101 - 313
Target Start/End: Complemental strand, 13070489 - 13070277
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || | |||||    
T  13070489 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaac 13070390  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatc 300  Q
    |||| ||||||| |||||||||||||||||||||||| || ||||||| ||||  |||| |  | |||| |||||| |||||||||||||||| ||| ||    
T  13070389 ttctcggacctgtattgaaagctatgaacttgtaagatggaacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccatgcagtc 13070290  T
Q  301 ttctccccatatt 313  Q
    |||||||||||||    
T  13070289 ttctccccatatt 13070277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 313
Target Start/End: Original strand, 13085911 - 13086198
Alignment:
Q  26 ttatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacct 125  Q
    ||||||||||| ||||||||||| | || ||| || || || |||| |||||| ||  ||||||||  |||  | |||||||  ||||||||||| || |    
T  13085911 ttatatcaaattcatcttttactaactttgactttgaatccatgttccatgcggagaacaatagaaactcttggagttacagaatgaccttccacaactt 13086010  T
Q  126 gtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctat 225  Q
    ||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||| || |||||    
T  13086011 gtatgtgaaacttccataacatagcagctgcaaccattttcatttgaacaatgctaatatctttcccaagacaacttcgaggacctgcattaaatgctat 13086110  T
Q  226 gaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 313  Q
    ||||||| |||| || ||||| | |||   |||| || | ||||||||||| || ||||||||||| |||| ||| |  |||||||||    
T  13086111 gaacttgcaagatggtacatgcaaaatatgtcctttatctgatatccatctctcgggcttaaattcgaagcgatccttaccccatatt 13086198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 31 - 313
Target Start/End: Original strand, 13007009 - 13007291
Alignment:
Q  31 tcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatg 130  Q
    |||||||||||||||| ||| ||  ||||| ||||| ||||||||| ||||  ||| ||||    || | |||| |||||||||| ||||||||| ||||    
T  13007009 tcaaatgcatcttttagtgactttaaccttcaagccatgtttcatgtgaagaacaaaagaaagcttcggggttatagggtgacctgccaccacctttatg 13007108  T
Q  131 cgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaact 230  Q
     |||||||   ||||||||  ||||| ||||| ||||||||||  ||||||||||| || || ||||||||||||||||||| |||||||||||||||||    
T  13007109 tgaaactttggtaacaaagctgctgcgaccatcttcatttgaatgaagctaatatccttgcccatacaacttctaggacctgtattgaaagctatgaact 13007208  T
Q  231 tgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 313  Q
    ||||||| || ||||||| ||||  ||||||  | || | |||||| |||||||||||||||| ||| |||||||||||||||    
T  13007209 tgtaagatggtacatgtataatgtgtcctctctctgacacccatctctcaggcttaaattccatgcagtcttctccccatatt 13007291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 101 - 313
Target Start/End: Original strand, 13129707 - 13129919
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || ||||||     
T  13129707 gttacagggtgaccttccaccacctgtatgtgaaacttctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13129806  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatc 300  Q
    |||| || ||||  |||||||||| |||||||||||| || ||||||| |||  |||| ||  | ||||||||||| |||||||||||||||| ||| ||    
T  13129807 ttctgggtcctgtgttgaaagctacgaacttgtaagatggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtc 13129906  T
Q  301 ttctccccatatt 313  Q
    |||||||||||||    
T  13129907 ttctccccatatt 13129919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 31 - 313
Target Start/End: Original strand, 13204268 - 13204550
Alignment:
Q  31 tcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctgtatg 130  Q
    |||||||||||||||| ||| ||  |||||||| || | ||||||| ||||  ||| |||| |  |  | |||||||||||||||||||| | || ||||    
T  13204268 tcaaatgcatcttttagtgactttaacctttaaaccatatttcatgtgaagaacaaaagaaatctttggggttacagggtgaccttccactatctttatg 13204367  T
Q  131 cgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaact 230  Q
     |||| |||  |||||||| |||||| ||||| ||||||||||  || |||| |||||| || | ||||||||||||||||| |||||||||||||||||    
T  13204368 tgaaaattctgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacccaaacaacttctaggacctgtattgaaagctatgaact 13204467  T
Q  231 tgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 313  Q
    ||||||| || ||||||| ||||  |||| |  | |||| |||||| |||||||||||||||| ||| |||||||||||||||    
T  13204468 tgtaagatggtacatgtataatgtgtcctgtctctgatacccatctctcaggcttaaattccatgcagtcttctccccatatt 13204550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 101 - 311
Target Start/End: Original strand, 13161400 - 13161610
Alignment:
Q  101 gttacagggtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaac 200  Q
    |||||| ||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||| ||||||||||  || |||| |||||| || ||||||     
T  13161400 gttacaaggtgaccttccaccacctgtatgtgaaacttccgtaacaaagcagctgcgaccatcttcatttgaatgaaactaagatctttacctatacaaa 13161499  T
Q  201 ttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatc 300  Q
    |||| || ||||  ||||||| ||||||||||||||| || ||||||| |||  |||| ||  | ||||||||||| |||||||||||||||| ||| ||    
T  13161500 ttctgggtcctgtgttgaaagatatgaacttgtaagaaggtacatgtataatatctcccctctcagatatccatctctcaggcttaaattccatgcagtc 13161599  T
Q  301 ttctccccata 311  Q
    ||| |||||||    
T  13161600 ttccccccata 13161610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 109 - 313
Target Start/End: Complemental strand, 19279473 - 19279269
Alignment:
Q  109 gtgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctagga 208  Q
    |||||||||||| ||||||||||||||||||||||| | || |||||||||||||||||||||||  ||  |||||||||| || | ||| ||||| |||    
T  19279473 gtgaccttccacgacctgtatgcgaaacttccataatacagcagctgcaaccattttcatttgaaggaaagtaatatcttttccgagacagcttctcgga 19279374  T
Q  209 cctgcattgaaagctatgaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctcccc 308  Q
    |||||||| || |||||||||||||| || || ||||||| |||   ||||||| ||||||||||||| ||||||  |||||| | |||||| || ||||    
T  19279373 cctgcattaaacgctatgaacttgtacgatggtacatgtataatttgtcctctatccgatatccatctctcaggccgaaattctaggcaatcatcacccc 19279274  T
Q  309 atatt 313  Q
    |||||    
T  19279273 atatt 19279269  T

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Target: chr1; HSP #15
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 313
Target Start/End: Complemental strand, 13065600 - 13065314
Alignment:
Q  27 tatatcaaatgcatcttttactgatttcgacctttaagccgtgtttcatgcgaagggcaatagaatttctcagcgttacagggtgaccttccaccacctg 126  Q
    |||||||||||||||||||| ||| |  |||||| ||||| |||||||| |  |||| |||||||   ||  | |||||||| ||||| ||||| |  ||    
T  13065600 tatatcaaatgcatcttttagtgactatgaccttcaagccatgtttcattccgagggtaatagaaagccttggagttacaggatgaccatccactaaatg 13065501  T
Q  127 tatgcgaaacttccataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatg 226  Q
    ||||| |||||||||||  | ||  || ||| |||| ||||||| ||| ||| | |||||||| || | ||||||||| || ||||||||||||||||||    
T  13065500 tatgcaaaacttccatagtatagccgcggcagccatcttcatttcaacgaaggtgatatctttacccaaacaacttcttggccctgcattgaaagctatg 13065401  T
Q  227 aacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 313  Q
    |||||||||||||| ||||||| |||   ||| ||    ||||||||||| |||||||||||||||| ||| |||||||||||||||    
T  13065400 aacttgtaagacggtacatgtataatttgtccgctttttgatatccatctctcaggcttaaattccatgcagtcttctccccatatt 13065314  T

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Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 13010661 - 13010720
Alignment:
Q  110 tgaccttccaccacctgtatgcgaaacttccataacaaagaagctgcaaccattttcatt 169  Q
    |||||||||||||| ||||||||||| ||||||||||||  |||||| ||||| ||||||    
T  13010661 tgaccttccaccacttgtatgcgaaatttccataacaaatcagctgcgaccatcttcatt 13010720  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 313
Target Start/End: Original strand, 12164206 - 12164364
Alignment:
Q  155 gcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttgtaagacgggacatgtacaatgc 254  Q
    |||||||||||||| | ||  ||||| ||||| || || | |||||| || || || ||||| ||||| |||||||||||||| || ||||  || || |    
T  12164206 gcaaccattttcatctcaatgaagcttatatccttacccaaacaactccttggtccagcattaaaagcaatgaacttgtaagaaggaacataaactatcc 12164305  T
Q  255 ctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatatt 313  Q
    ||||| |    || ||||| || || |||||||||||||||||||||||||||||||||    
T  12164306 ctcctttttgagaaatccacctctctggcttaaattccaagcaatcttctccccatatt 12164364  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 312
Target Start/End: Complemental strand, 377658 - 377572
Alignment:
Q  226 gaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatat 312  Q
    |||||| ||||||||  |||| |||||||  |||||  | ||||||||||| || ||||| || |||||||||||||||||||||||    
T  377658 gaacttataagacggttcatgaacaatgctacctctctcagatatccatctctctggcttgaactccaagcaatcttctccccatat 377572  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 341942 - 341859
Alignment:
Q  226 gaacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctcccca 309  Q
    |||||||||||||||  |||  ||||||||||||||  | || ||||| || || |||||||| ||||||||||||| ||||||    
T  341942 gaacttgtaagacggcgcataaacaatgcctcctctctcagaaatccacctctctggcttaaactccaagcaatcttttcccca 341859  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 31380344 - 31380253
Alignment:
Q  141 ataacaaagaagctgcaaccattttcatttgaacaaagctaatatctttcccaatacaacttctaggacctgcattgaaagctatgaacttg 232  Q
    ||||||||||||| |||  ||| || |||||||  || |||| |||||| |||||||||||||  || |||| |||||||| ||||||||||    
T  31380344 ataacaaagaagccgcagacatcttaatttgaatgaaactaagatctttaccaatacaacttccgggtcctgtattgaaagatatgaacttg 31380253  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 346845 - 346930
Alignment:
Q  227 aacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatat 312  Q
    ||||||||||| ||   ||| ||||||||||||||  | ||||||||||| || ||||| || ||||| ||||||| |||||||||    
T  346845 aacttgtaagatggtgtatgaacaatgcctcctctctcagatatccatctctctggcttgaactccaaacaatcttttccccatat 346930  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 355504 - 355589
Alignment:
Q  227 aacttgtaagacgggacatgtacaatgcctcctctaaccgatatccatctttcaggcttaaattccaagcaatcttctccccatat 312  Q
    ||||||||||| ||   ||| ||||||||||||||  | ||||||||||| || ||||| || ||||| ||||||| |||||||||    
T  355504 aacttgtaagatggtgtatgaacaatgcctcctctctcagatatccatctctctggcttgaactccaaacaatcttttccccatat 355589  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Original strand, 36668187 - 36668216
Alignment:
Q  284 ttaaattccaagcaatcttctccccatatt 313  Q
    ||||||||||||||||||||||||||||||    
T  36668187 ttaaattccaagcaatcttctccccatatt 36668216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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