View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_109 (Length: 317)
Name: NF11309A_low_109
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_109 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 50442043 - 50442336
Alignment:
| Q |
1 |
aattccttaagaaattgaatacatacagataaaaatctcttaaccaagctagaaatttaaacttttattaatgtttggagatataaagttgaaacagtgc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50442043 |
aattccttaagaaattgaatacatactgataaaaatctcttaaccaagctagaaatttaaacttttattaatgtttggcgatataaagttgaaacagtgc |
50442142 |
T |
|
| Q |
101 |
aatctaaagttacatattgattatttgtcatgttaattatcagaatggatggacggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgtt |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50442143 |
aatctaaagttacatattgattatttttcatgttaattatcagaatggatggacggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgtt |
50442242 |
T |
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| Q |
201 |
acttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaagaatcagatgctcaattcctgcctgagaagcatattcaatc |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50442243 |
acttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaagaatcagatgctcaattcctgcctgcgaagcatattcaatc |
50442336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 161 - 294
Target Start/End: Original strand, 50447104 - 50447237
Alignment:
| Q |
161 |
aaactagaagctagaagtaaaatttgtaaaatgtgatgttacttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaagaatcag |
260 |
Q |
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|||||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
50447104 |
aaactataagctagaagtaaaatttgcaaaatgtgatgctacttaggaaaatggatgcatacttgtgcaaactagtttttgctgaagagccaagaatcag |
50447203 |
T |
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| Q |
261 |
atgctcaattcctgcctgagaagcatattcaatc |
294 |
Q |
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||||||||||||| | |||||||||||||||||| |
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| T |
50447204 |
atgctcaattcctacttgagaagcatattcaatc |
50447237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 294
Target Start/End: Original strand, 50421965 - 50422104
Alignment:
| Q |
155 |
ggtacaaaactagaagctagaagtaaaatttgtaaaatgtgatgttacttagagaaatggatgtatacttgagcaaactagtttttgttgaagagccaag |
254 |
Q |
| |
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|||| |||||||||||||| ||||||| |||| || ||| ||| |||||| | |||| |||| ||||| |||||| ||| | ||||||| |||||||| |
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| T |
50421965 |
ggtagaaaactagaagctaaaagtaaactttgcaacatgctatgctacttataaaaatagatgcatactcaagcaaattagctcttgttgaggagccaag |
50422064 |
T |
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| Q |
255 |
aatcagatgctcaattcctgcctgagaagcatattcaatc |
294 |
Q |
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|| || |||||||||||| | | |||| |||||||||||| |
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| T |
50422065 |
aaccaaatgctcaattcccgtccgagaggcatattcaatc |
50422104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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