View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_11 (Length: 534)

Name: NF11309A_low_11
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_11
NF11309A_low_11
[»] chr3 (5 HSPs)
chr3 (32-513)||(25421935-25422417)
chr3 (91-255)||(19792278-19792442)
chr3 (185-312)||(22522581-22522708)
chr3 (96-253)||(1538886-1539043)
chr3 (160-247)||(54332494-54332581)
[»] chr8 (5 HSPs)
chr8 (91-511)||(7175855-7176274)
chr8 (160-422)||(25938861-25939124)
chr8 (99-177)||(45381822-45381900)
chr8 (91-255)||(40796539-40796703)
chr8 (198-247)||(30273697-30273746)
[»] chr4 (3 HSPs)
chr4 (91-511)||(26622395-26622818)
chr4 (91-255)||(11116161-11116325)
chr4 (99-237)||(50858462-50858600)
[»] chr7 (3 HSPs)
chr7 (91-422)||(36877613-36877946)
chr7 (93-429)||(20463489-20463824)
chr7 (96-247)||(27804616-27804767)
[»] chr2 (6 HSPs)
chr2 (133-429)||(11524038-11524335)
chr2 (163-252)||(32835918-32836007)
chr2 (182-257)||(40492432-40492508)
chr2 (198-257)||(13221825-13221884)
chr2 (96-247)||(14150238-14150389)
chr2 (191-247)||(5595135-5595191)
[»] chr5 (3 HSPs)
chr5 (132-256)||(14489276-14489400)
chr5 (93-429)||(34673595-34673932)
chr5 (161-256)||(27039765-27039858)
[»] chr1 (5 HSPs)
chr1 (165-256)||(3158400-3158491)
chr1 (96-247)||(19477370-19477521)
chr1 (96-252)||(12928642-12928798)
chr1 (96-247)||(3215060-3215211)
chr1 (96-255)||(30091883-30092042)
[»] chr6 (3 HSPs)
chr6 (91-188)||(13243976-13244073)
chr6 (96-253)||(1512284-1512440)
chr6 (198-263)||(5477353-5477418)


Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 32 - 513
Target Start/End: Original strand, 25421935 - 25422417
Alignment:
Q  32 ctctcattccaatagcatatatcacacacaatattctcaatcatccttaannnnnnnnnaaaggaaatagcttatagcctttcattagatatcaaatgcc 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||||||||||||    
T  25421935 ctctcattccaatagcatatatcacacacaatattctcaatcatccttaatttttttttaaaggaaatagcttatagcttttcattagatatcaaatgcc 25422034  T
Q  132 aaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagctaaattatgagcgacttcatttgcttgtctcctacaaaa 231  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||    
T  25422035 aaatacaagaaggtacaccattaaaatcatggggactagctaagaatgtagcctctcgggctaaattatgagcgacttcattcgcttgtctcttacaaaa 25422134  T
Q  232 ctctaccttagagtttccaaaataagaattacaccgctttctacaatcatcaataatgactccaaattctgagatatcattgttaccggtgttgaaatag 331  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25422135 ctctaccttagagtttccaaaataagaattacaccgcttcctacaatcatcaataatgactccaaattctgagatatcattattaccggtgttgaaatag 25422234  T
Q  332 tctacaaccctcttggcatccaaatcgaaatcgactttgggagttgtagatcatgaacccactgaatagcttgtgacagacccaaagcttcacctatatc 431  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25422235 tctacaaccctcttggcatccaactcgaaatcgactttgggagttgtagatcatgaacccactggatagcttgtgacagacccaaagcttcacctatatc 25422334  T
Q  432 caacacataca--gggcttcaccacgtcgttcttgctttcacaaaattccagcgatcgtctcggatacacataccataaccagc 513  Q
    ||||||| |||  || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25422335 caacacacacacgggacttcaccacgtcgttcttgctttcacaaaa-tccagcgatcgtctcggatacacataccataaccagc 25422417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 255
Target Start/End: Complemental strand, 19792442 - 19792278
Alignment:
Q  91 aaaggaaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcga 190  Q
    ||||||||||||||||||| |||||||||||||||||  | ||||||||  ||||||| ||| |||   ||||||||||||||| || || ||||||| |    
T  19792442 aaaggaaatagcttatagcttttcattagatatcaaagtcgaaatacaaagaggtacatcatcaaagagatggggactagctaataaagtggcctctcta 19792343  T
Q  191 gctaaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaata 255  Q
    || |   ||||||| ||  ||||||||||||||| |  |||||| |||||||||||| |||||||    
T  19792342 gcaagtgtatgagcaaccacatttgcttgtctccgattaaactccaccttagagttttcaaaata 19792278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 312
Target Start/End: Original strand, 22522581 - 22522708
Alignment:
Q  185 tctcgagctaaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaataagaattacaccgctttctacaatcatcaa 284  Q
    |||||||| | | ||||||||||  |||| |||||||||| || |||||| |||||||||||| ||||| ||  ||| ||   ||| ||||| ||||| |    
T  22522581 tctcgagcaagagtatgagcgaccacattcgcttgtctccgactaaactccaccttagagttttcaaaaaaatcattgcaattcttcctacattcatcca 22522680  T
Q  285 taatgactccaaattctgagatatcatt 312  Q
    | ||| |||||||||| || ||||||||    
T  22522681 ttatggctccaaattcggatatatcatt 22522708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 253
Target Start/End: Original strand, 1538886 - 1539043
Alignment:
Q  96 aaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagctaa 195  Q
    |||||||||||| | |||||||| | ||||||  | | ||||||  ||||||| ||| |||| |||||| ||||| || | |  | |||||| |||| |     
T  1538886 aaatagcttataacttttcattaaaaatcaaagtcgagatacaaagaggtacatcatcaaaaacatgggaactagttagggaaatggcctctggagcaag 1538985  T
Q  196 attatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaa 253  Q
    | ||||||||||   ||| |||||||||| || |||||| |||||||||||| |||||    
T  1538986 agtatgagcgaccatattcgcttgtctccgactaaactccaccttagagttttcaaaa 1539043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 54332494 - 54332581
Alignment:
Q  160 atggggactagcta-agaatgtagcctctcgagctaaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagttt 247  Q
    |||||||||||||| |||| || ||||||||||| | | ||||||||||  |||| | |||||||| || |||||| ||||||||||||    
T  54332494 atggggactagctagagaa-gtggcctctcgagcaagagtatgagcgaccacattcgtttgtctccgactaaactccaccttagagttt 54332581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 91 - 511
Target Start/End: Complemental strand, 7176274 - 7175855
Alignment:
Q  91 aaaggaaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcga 190  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7176274 aaaggaaataacttatagcttttcattagatatcaaatgccaaatacaagaaggtacaccattaaaatcatggggactagctaagaatgtagcctctcga 7176175  T
Q  191 gctaaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaataagaattacaccgctttctacaatcatcaataatga 290  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||| |||||||||||||||||||    
T  7176174 gctaaattatgagcgacttcattcgcttgtctcctacaaaactcaaccttagaattttcaaaataagaattacaccacttcctacaatcatcaataatga 7176075  T
Q  291 ctccaaattctgagatatcattgttaccggtgttgaaatagtctacaaccctcttggcatccaaatcgaaatcgac-tttgggagttgtagatcatgaac 389  Q
    ||||||||||||||||||||| |||||| ||||| |||||||||||||| |||||| ||||||| ||||||| ||| |||||||||||||||||||||||    
T  7176074 ctccaaattctgagatatcatcgttacccgtgtt-aaatagtctacaactctcttgacatccaactcgaaattgacatttgggagttgtagatcatgaac 7175976  T
Q  390 ccactgaatagcttgtgacagacccaaagcttcacctatatccaacacatacagggcttcaccacgtcgttcttgctttcacaaaattccagcgatcgtc 489  Q
    |||||| ||||||||||||||| |||||||||||||||||||| ||| | || || ||| ||||| |||| ||||||||||||||||||| |||||| ||    
T  7175975 ccactggatagcttgtgacaga-ccaaagcttcacctatatccgacaaacacgggtcttgaccacatcgtccttgctttcacaaaattcccgcgatcatc 7175877  T
Q  490 tcggatacacataccataacca 511  Q
    ||||||||||||||||||||||    
T  7175876 tcggatacacataccataacca 7175855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 160 - 422
Target Start/End: Complemental strand, 25939124 - 25938861
Alignment:
Q  160 atggggactagctaagaatgtagcctctcgagctaaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaataagaa 259  Q
    ||||||| |||||||||| || ||||||||||||||| | |||||||| ||||| |||||||||| || ||||||||||||||||||| |||| |||  |    
T  25939124 atggggattagctaagaaagtggcctctcgagctaaagtgtgagcgacctcattcgcttgtctccgactaaactctaccttagagttttcaaagtaaaga 25939025  T
Q  260 ttacaccgctttctacaatcatcaataatgactccaaattctgagatatcattgttaccggtgttgaaatagtctacaaccctcttggcatccaaatcga 359  Q
    ||||| |   ||||||| || || |  ||  ||||||| || |  ||||||||||| ||  | || ||||| ||||||||  ||||||||||||| || |    
T  25939024 ttacaacttcttctacactcctccactattgctccaaactcggttatatcattgtttcctctattaaaataatctacaactttcttggcatccaattcaa 25938925  T
Q  360 aatcgac-tttgggagttgtagatcatgaacccactgaatagcttgtgacagacccaaagcttc 422  Q
    |||| || ||||  ||| |||| ||||| ||||| || ||||| ||||| || |||| ||||||    
T  25938924 aatccacatttgttagtagtagttcatgtacccattggatagcatgtgagagtcccatagcttc 25938861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 45381822 - 45381900
Alignment:
Q  99 tagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaa 177  Q
    ||||||||||| |||||||||| |||||     ||||||||||||| ||| |||||||| |||||||||||||||||||    
T  45381822 tagcttatagcttttcattagaaatcaatgttgaaatacaagaaggaacaacattaaaaacatggggactagctaagaa 45381900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 255
Target Start/End: Complemental strand, 40796703 - 40796539
Alignment:
Q  91 aaaggaaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcga 190  Q
    ||||||||||||||||||| |||||||| ||||||||  | ||||||||  ||||||| ||| |||   || |||||||||||| || || || |||| |    
T  40796703 aaaggaaatagcttatagcttttcattaaatatcaaaatcgaaatacaaagaggtacatcatcaaagagatagggactagctaataaagtggcatctcta 40796604  T
Q  191 gctaaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaata 255  Q
    || |   ||||||| ||  ||||||||||| ||| |  |||||  |||||| ||||| |||||||    
T  40796603 gcaagtgtatgagcaaccacatttgcttgtttccgattaaacttcaccttaaagttttcaaaata 40796539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 30273697 - 30273746
Alignment:
Q  198 tatgagcgacttcatttgcttgtctcctacaaaactctaccttagagttt 247  Q
    |||||||||||||||| |||||||||| || |||||| ||||||| ||||    
T  30273697 tatgagcgacttcattcgcttgtctccgactaaactccaccttagtgttt 30273746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 91 - 511
Target Start/End: Complemental strand, 26622818 - 26622395
Alignment:
Q  91 aaaggaaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcga 190  Q
    ||||||||||||||||||| |||||||||||||||| || ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  26622818 aaaggaaatagcttatagcttttcattagatatcaattgtcaaatacaagaaggtacgccattaaaatcatggggactagctaagaatgtagcctctcga 26622719  T
Q  191 gctaaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaataagaattacaccgctttctacaatcatcaataatga 290  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  26622718 gctaaattataagcgacttcattcgcttgtctcctacaaaactctaccttagagtttctaaaataagaattacaccgcttcctacaatcatcaataatga 26622619  T
Q  291 ctccaaattctgagatatcattgttaccggtgttgaaatagtctacaaccctcttggcatccaaatcgaaatcgac-tttgggagttgtagatcatgaac 389  Q
    ||||||||||||||||||||||||||||  ||||||||| ||||||||| |||||||| ||||| ||||||||||| |||||||||||||| ||||||||    
T  26622618 ctccaaattctgagatatcattgttacctatgttgaaatggtctacaactctcttggcttccaactcgaaatcgacatttgggagttgtagctcatgaac 26622519  T
Q  390 ccactgaatagcttgtgacagacccaaagcttcacctatatccaacacataca--gggcttcaccacgtcgttcttgctttcacaaaattccagcgatcg 487  Q
    |||||| ||||||||||||| |||| |||||||||||| |||| ||||| |||  |||||| ||||| |||| ||| ||||||||||||||| |||||      
T  26622518 ccactggatagcttgtgacaaaccctaagcttcacctacatccgacacacacacggggcttgaccacatcgtccttactttcacaaaattcccgcgatta 26622419  T
Q  488 tctcggatacacataccataacca 511  Q
    ||||||||||||||||||||||||    
T  26622418 tctcggatacacataccataacca 26622395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 91 - 255
Target Start/End: Complemental strand, 11116325 - 11116161
Alignment:
Q  91 aaaggaaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcga 190  Q
    ||||||||||||||||||| |||||||| |||||||||   |||||||| |||| ||| ||||||||  |||||||||||||||| | || |||||| |     
T  11116325 aaaggaaatagcttatagcttttcattaaatatcaaatttgaaatacaaaaaggcacatcattaaaattatggggactagctaaggacgtggcctcttgt 11116226  T
Q  191 gctaaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaata 255  Q
    || | | | |||||||| || || |||||||||| || ||||||||||||||||||| |||||||    
T  11116225 gcaagagtgtgagcgacctcgttcgcttgtctccgactaaactctaccttagagtttgcaaaata 11116161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 237
Target Start/End: Complemental strand, 50858600 - 50858462
Alignment:
Q  99 tagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagctaaatt 198  Q
    ||||||||||  |||||||| |||| |||  |||||||||||  || |||  || |||  ||||||||||||||||| |    ||||||||||| | | |    
T  50858600 tagcttatagtttttcattacatattaaagaccaaatacaaggtggaacattatcaaacacatggggactagctaaggacaaggcctctcgagcaagagt 50858501  T
Q  199 atgagcgacttcatttgcttgtctcctacaaaactctac 237  Q
    ||||||||| || || |||||||||| || |||||||||    
T  50858500 atgagcgacctcgttcgcttgtctccgactaaactctac 50858462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 91 - 422
Target Start/End: Complemental strand, 36877946 - 36877613
Alignment:
Q  91 aaaggaaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcga 190  Q
    ||||||||||| ||||||  ||||||||||||| |||||||||||| ||||||||||| |||||||| |||| | |||||||||||||||||||||| ||    
T  36877946 aaaggaaatagtttatagtttttcattagatattaaatgccaaatataagaaggtacatcattaaaatcatgagaactagctaagaatgtagcctcttga 36877847  T
Q  191 gctaaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaataagaattacaccgctttctacaatcatcaataatga 290  Q
    |||||||||||| | ||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36877846 gctaaattatgaacaacttcgttcgtttgtctcctacaaaactctaccttagagtttccaaaataagaattacaccgcttcctacaatcatcaataatga 36877747  T
Q  291 ctccaaattctgagatatcattgtta-ccggtgttgaaatagtctacaaccctcttggcatccaaatcgaaatcgac-tttgggagttgtagatcatgaa 388  Q
    ||||||||| ||||||| |||||||| || ||||||||||||||||||| ||||||| ||||||| || |||| ||| |||||||||||||||||| |||    
T  36877746 ctccaaattatgagataccattgttaccccgtgttgaaatagtctacaatcctcttgacatccaactcaaaattgacatttgggagttgtagatcaggaa 36877647  T
Q  389 cccactgaatagcttgtgacagacccaaagcttc 422  Q
    |||| |  ||||||||||||||||||||||||||    
T  36877646 cccattagatagcttgtgacagacccaaagcttc 36877613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 93 - 429
Target Start/End: Original strand, 20463489 - 20463824
Alignment:
Q  93 aggaaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagc 192  Q
    ||||||||||||||||| |||||||||| || |||   | |||||||||||||||| ||||||||   ||||||||||||| || | | ||||||  | |    
T  20463489 aggaaatagcttatagcttttcattagaaattaaacatccaatacaagaaggtacaacattaaaaatttggggactagctaggattatggcctct--acc 20463586  T
Q  193 taaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaataagaattacaccgctttctacaatcatcaataatgact 292  Q
     | | ||||||||||   | | ||||||||||||  |||||| |||||||||||| ||||  |||||  ||||||   ||||||||| ||||| ||        
T  20463587 aagaatatgagcgaccatactcgcttgtctcctattaaactcaaccttagagttttcaaaccaagaacaacaccgacgtctacaatcctcaatgattgtg 20463686  T
Q  293 ccaaattctgagatatcattgttaccggtgttgaaatagtctacaaccctcttggcatccaaatcgaaatcgactttgg-gagttgtagatcatgaaccc 391  Q
    |||||||| || ||||||||| | ||  |  || |||| ||||||||||  ||||||||||  || ||||| || || | |||||| || ||||| ||||    
T  20463687 ccaaattcagatatatcattgcttcctttaatgtaataatctacaacccgtttggcatccatctcaaaatcaacattagtgagttgcagctcatgtaccc 20463786  T
Q  392 actgaatagcttgtgacagacccaaagcttcacctata 429  Q
    |||| ||||| | |||||||||||||||||||||||||    
T  20463787 actggatagcatatgacagacccaaagcttcacctata 20463824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 247
Target Start/End: Original strand, 27804616 - 27804767
Alignment:
Q  96 aaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagctaa 195  Q
    |||||| ||||||| ||||||||   ||||||  | |||||||   ||||||| |||||||  ||||||||| |||| ||||| | ||||||| ||| |     
T  27804616 aaatagtttatagcttttcattattaatcaaagtcaaaatacatagaggtacatcattaaagacatggggaccagctgagaatatggcctctctagcaag 27804715  T
Q  196 attatgagcgacttcatttgcttgtctcctacaaaactctaccttagagttt 247  Q
    | |||||||||| ||||| |||||| ||| ||  ||||| ||||||||||||    
T  27804716 agtatgagcgacctcattcgcttgtttccgactgaactccaccttagagttt 27804767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 133 - 429
Target Start/End: Original strand, 11524038 - 11524335
Alignment:
Q  133 aatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagctaaattatgagcgacttcatttgcttgtctcctacaaaac 232  Q
    |||||||||||||||| ||||||||   |||| ||||| || || | | ||||||| ||| | | |||||||||||  ||| ||||||||||||  ||||    
T  11524038 aatacaagaaggtacaacattaaaagtttgggaactagttaggagtatggcctctctagcaatagtatgagcgactatattcgcttgtctcctattaaac 11524137  T
Q  233 tctaccttagagtttccaaaataagaattacaccgctttctacaatcatcaataatgactccaaattctgagatatcattgttaccggtgttgaaatagt 332  Q
    || | |||||||||| ||||  |||||  ||| ||   ||||||||||||||| ||  | |||||||| || ||||||||| | ||  |  || |||| |    
T  11524138 tcaatcttagagttttcaaaccaagaacaacatcgacgtctacaatcatcaatgattgcgccaaattcagatatatcattgcttcctttaatgtaataat 11524237  T
Q  333 ctacaaccctcttggcatccaaatcgaaatcgactttgg-gagttgtagatcatgaacccactgaatagcttgtgacagacccaaagcttcacctata 429  Q
    ||||| |||  ||||||||||  || |||||||| || | |||||| || ||||| |||||||||||||| | |||||||||||||||||||||||||    
T  11524238 ctacagcccgtttggcatccatctcaaaatcgacattagtgagttgcagctcatgtacccactgaatagcatatgacagacccaaagcttcacctata 11524335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 32835918 - 32836007
Alignment:
Q  163 gggactagctaagaatgtagcctctcgagctaaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaa 252  Q
    ||||||||||| ||| || |||||||| || | ||||||||| || ||||| | |||||||| || |||||| |||||||||||| ||||    
T  32835918 gggactagctaggaaagtggcctctcgtgcaagattatgagctacctcattcgtttgtctccgactaaactcaaccttagagttttcaaa 32836007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 40492508 - 40492432
Alignment:
Q  182 gcctctcgagctaaattatgagcgacttcatttgcttgtctcctacaaaactctacc-ttagagtttccaaaataag 257  Q
    ||||||||||| ||  | |||||||| ||||| |||||||||| || |||||||||| ||||||||| |||||||||    
T  40492508 gcctctcgagcaaatgtgtgagcgacctcattcgcttgtctccgactaaactctacctttagagtttacaaaataag 40492432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 13221884 - 13221825
Alignment:
Q  198 tatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaataag 257  Q
    ||||||| || ||| |||||||||||  || ||||||||||||||||||| |||||||||    
T  13221884 tatgagcaacctcagttgcttgtctctgactaaactctaccttagagttttcaaaataag 13221825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 247
Target Start/End: Original strand, 14150238 - 14150389
Alignment:
Q  96 aaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagctaa 195  Q
    |||||||||||||| ||||||||   ||||||  | |||||||   |||||||  ||||||  ||||||||| |||| ||||| | ||||||  ||| |     
T  14150238 aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacattattaaatacatggggaccagctgagaatatggcctctttagcaag 14150337  T
Q  196 attatgagcgacttcatttgcttgtctcctacaaaactctaccttagagttt 247  Q
    | |||||||||| ||||| |||||||||| ||  |||||  |||||||||||    
T  14150338 agtatgagcgacctcattcgcttgtctccgactgaactcatccttagagttt 14150389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 5595135 - 5595191
Alignment:
Q  191 gctaaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagttt 247  Q
    |||||| | ||||| || ||||||||||||| ||||| |||||| ||||||||||||    
T  5595135 gctaaagtgtgagctacctcatttgcttgtcgcctactaaactcgaccttagagttt 5595191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 132 - 256
Target Start/End: Original strand, 14489276 - 14489400
Alignment:
Q  132 aaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagctaaattatgagcgacttcatttgcttgtctcctacaaaa 231  Q
    ||||||||  ||||||| |||||||| | ||||||||||||||||||  |||||||| ||| | | |||||||||| ||||| |||||||||| || |||    
T  14489276 aaatacaaagaggtacatcattaaaaacttggggactagctaagaataaagcctctctagcaagagtatgagcgacctcattcgcttgtctccgactaaa 14489375  T
Q  232 ctctaccttagagtttccaaaataa 256  Q
    ||  |||||||||||| | ||||||    
T  14489376 cttcaccttagagttttcgaaataa 14489400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 93 - 429
Target Start/End: Complemental strand, 34673932 - 34673595
Alignment:
Q  93 aggaaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagc 192  Q
    ||||||||||||||||| |||||||||| || |||   | |||||||||||||| | ||||||||   ||||||||||||| || | | | |||||  ||    
T  34673932 aggaaatagcttatagcttttcattagaaattaaagatccaatacaagaaggtagaacattaaaagtttggggactagctaggagtatggtctctcttgc 34673833  T
Q  193 taaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaataagaattacaccgctttctacaatcatcaataatgact 292  Q
     | | |||||  |||   ||| |||||| |||||  |||||| |||||||||||| ||||  || ||  ||| ||   ||||||||||||||| ||  |     
T  34673832 aagagtatgaatgaccatattcgcttgtttcctattaaactcaaccttagagttttcaaaccaataacaacatcgacgtctacaatcatcaatgattgcg 34673733  T
Q  293 ccaaattctgagatatcattgttaccggtgttgaaatagtctacaaccctcttggcatccaaatcgaaatcgactttgg-gagttgtagatcatgaaccc 391  Q
    |||||||| || ||||||||| | ||  |  || |||| ||||||||||  ||||||||||  || |||||||| || | |||||| || ||||| ||||    
T  34673732 ccaaattcagatatatcattgcttcctttaatgtaataatctacaacccgtttggcatccatctcaaaatcgacgttagtgagttgcagctcatgtaccc 34673633  T
Q  392 actgaatagcttgtgacagacccaaagcttcacctata 429  Q
    | || ||||| | |||||| ||||||||||||||||||    
T  34673632 attggatagcatatgacaggcccaaagcttcacctata 34673595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 256
Target Start/End: Original strand, 27039765 - 27039858
Alignment:
Q  161 tggggactagctaagaatgtagcctctcgagctaaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaataa 256  Q
    |||||||||| |||||||  |||||||| ||| | | |||||||||| ||||| ||| |||||||   |||||| |||||||||||| | ||||||    
T  27039765 tggggactagataagaataaagcctctctagcaagagtatgagcgacctcattcgctcgtctcctt--aaactccaccttagagttttcgaaataa 27039858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 165 - 256
Target Start/End: Original strand, 3158400 - 3158491
Alignment:
Q  165 gactagctaagaatgtagcctctcgagctaaattatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaataa 256  Q
    ||||| ||||||| || ||||||||||| | | |||||| ||||||| | |||||||||| || ||||||||||||||||||| ||||||||    
T  3158400 gactaactaagaaagtggcctctcgagcaagagtatgagtgacttcactcgcttgtctccgactaaactctaccttagagttttcaaaataa 3158491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 96 - 247
Target Start/End: Complemental strand, 19477521 - 19477370
Alignment:
Q  96 aaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagctaa 195  Q
    |||||||||||||| ||| |||| | |||||   |  |||||||  ||||||| ||||||||  |||||||||||||||||| || |||||||| || |     
T  19477521 aaatagcttatagcttttgattaaaaatcaacgtcgtaatacaatgaggtacatcattaaaagtatggggactagctaagaaagtggcctctcgtgcaag 19477422  T
Q  196 attatgagcgacttcatttgcttgtctcctacaaaactctaccttagagttt 247  Q
    | | |||||||| ||||| |||||||||| || |||||||||| | ||||||    
T  19477421 agtgtgagcgacctcattcgcttgtctccgactaaactctaccatggagttt 19477370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 252
Target Start/End: Complemental strand, 12928798 - 12928642
Alignment:
Q  96 aaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagctaa 195  Q
    |||||||||||||| ||||||||   ||||||  | ||||||||  |||| || |||||||   |||||||| || |||||| || | |||||||| |||    
T  12928798 aaatagcttatagcttttcattaataatcaaagtcgaaatacaaagaggtgcaacattaaagatatggggacaagttaagaaagtggtctctcgagataa 12928699  T
Q  196 attatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaa 252  Q
    | | ||||| || | ||| |||||| ||| || ||||||||||||||||||| ||||    
T  12928698 agtgtgagcaaccttattcgcttgtttccgactaaactctaccttagagttttcaaa 12928642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 247
Target Start/End: Complemental strand, 3215211 - 3215060
Alignment:
Q  96 aaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagctaa 195  Q
    |||||||||||||| ||||||||   ||||||  | |||||||   ||||||| |||||||  ||||||||| | || | ||| | ||||||  ||| |     
T  3215211 aaatagcttatagcttttcattattaatcaaagtcaaaatacatagaggtacatcattaaagacatggggaccaactgaaaatatggcctctgtagcaag 3215112  T
Q  196 attatgagcgacttcatttgcttgtctcctacaaaactctaccttagagttt 247  Q
    | |||||||||| ||||| |||||||||||||  ||||| ||||||||||||    
T  3215111 agtatgagcgacctcattcgcttgtctcctactgaactccaccttagagttt 3215060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 255
Target Start/End: Original strand, 30091883 - 30092042
Alignment:
Q  96 aaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagctaa 195  Q
    |||||||||||||| ||||||||   ||||||  | ||||||||   ||| || |||||||   |||| |||||| |||||| ||  ||||||||||||     
T  30091883 aaatagcttatagcttttcattaataatcaaagtcgaaatacaaagtggtgcaacattaaagatatggagactagttaagaaagtgtcctctcgagctag 30091982  T
Q  196 attatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaata 255  Q
    | | |||||||| || || | |||||||| || |||||||||||||| |||| |||||||    
T  30091983 agtgtgagcgacctccttcgattgtctccgactaaactctaccttagtgttttcaaaata 30092042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 13244073 - 13243976
Alignment:
Q  91 aaaggaaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctc 188  Q
    ||||||||||||||||||| |||||||||||||||||  | ||||||||  ||||||| ||| |||   ||||||||||||||| || || |||||||    
T  13244073 aaaggaaatagcttatagcttttcattagatatcaaaatcgaaatacaaagaggtacatcatcaaagagatggggactagctaataaagtggcctctc 13243976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 253
Target Start/End: Complemental strand, 1512440 - 1512284
Alignment:
Q  96 aaatagcttatagcctttcattagatatcaaatgccaaatacaagaaggtacaccattaaaaccatggggactagctaagaatgtagcctctcgagctaa 195  Q
    |||||||||||||| |||||||| | ||||| | | | ||||||  ||||||| ||| ||||  |||||||||||||| | |  |  |||||||||| |     
T  1512440 aaatagcttatagcttttcattaaaaatcaagt-cgagatacaaagaggtacatcatcaaaaatatggggactagctagggaaatgacctctcgagcaag 1512342  T
Q  196 attatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaa 253  Q
    | ||||||||||  |||| |||||||||| || |||||| |||||||| ||| |||||    
T  1512341 agtatgagcgaccacattcgcttgtctccgactaaactccaccttagaattttcaaaa 1512284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 5477353 - 5477418
Alignment:
Q  198 tatgagcgacttcatttgcttgtctcctacaaaactctaccttagagtttccaaaataagaattac 263  Q
    |||||| ||| ||||| |||||||||| || |||||| |||||||||||| ||||| ||| |||||    
T  5477353 tatgagtgacctcattcgcttgtctccgactaaactccaccttagagttttcaaaaaaagcattac 5477418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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