View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_115 (Length: 306)

Name: NF11309A_low_115
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_115
NF11309A_low_115
[»] chr4 (1 HSPs)
chr4 (14-306)||(21327030-21327323)


Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 14 - 306
Target Start/End: Original strand, 21327030 - 21327323
Alignment:
Q  14 agagaggtcttgtaactgtactaggagcactactaggaatgatccttgcagccatgtttgtg-ccaaagaatttagtaaaagaacaaggtaaagtacaag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  21327030 agagaggtcttgtaactgtactaggagcactactaggaatgatccttgcagccatgtttgtgtccaaagaatttagtaaaagaacaaggtaaagtacaag 21327129  T
Q  113 aagagtgatgaaatgtgaagaagacatcaaaaatatttttcaaacttgtaattttgtctttgattttgagtttgtatatgtgagactgaaaagagaggtt 212  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21327130 aagagtgatgaaatgtgaagaagacatcaaaaatattttttaaacttgtaattttgtctttgattttgagtttgtatatgtgagactgaaaagagaggtt 21327229  T
Q  213 ttatggtagattggtgtaaaagggttgaaaataagtgtcttaaataggctcgtgaatagctgaagaatgcagatatttttacagctcattggta 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21327230 ttatggtagattggtgtaaaagggttgaaaataagtgtcttaaataggctcgtgaatagctgaagaatgcagatatttttacagctcattggta 21327323  T

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