View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_118 (Length: 302)

Name: NF11309A_low_118
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_118
NF11309A_low_118
[»] chr5 (1 HSPs)
chr5 (6-294)||(28606468-28606756)


Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 294
Target Start/End: Original strand, 28606468 - 28606756
Alignment:
Q  6 atatatatgtcaaattcatctcgagattctttaattttaatatttgtattagattagtcctttaaggttttgtcaatttgaaattggtcctttatgttaa 105  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||     
T  28606468 atatatatgtcaaattcatctcgagcttctttaattttaatatttgtattagattagtcctttaaggttttgtcaagttgaaattggtcttttatgttag 28606567  T
Q  106 taatagtgtatatcgttactcttctattaagttgtcattcaaaaacaagcatatgtgtccattaacttgctatatacatttctcacataaattttttggc 205  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28606568 taatagtgtatatcgttactcttctattaagttgtcatttaaaaacaagcatatgtgtccattaacttgctatatacatttctcacataaaatttttggc 28606667  T
Q  206 attacaaaataatgatagttctccttaatgggatcatatgcatcgtcatttgattcctcagtctccgactctgatgatttatattcttc 294  Q
    ||||| ||| ||||||||||||||||||||  |||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||    
T  28606668 attactaaagaatgatagttctccttaatgtcatcatatgcatcgttatttgattccttagtcttcgactctgatgatttacattcttc 28606756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University