View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_119 (Length: 301)
Name: NF11309A_low_119
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_119 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 6262603 - 6262476
Alignment:
| Q |
7 |
aaatggaagaatttcaaggaactatgtaaaagttcagtgagaggaatagaaaataatgcattgttctgtaattttgattatgatttttcaagcttcttta |
106 |
Q |
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| T |
6262603 |
aaatggaagaatttcaaggaactatgtaaaagttcagtgagaggaatagaaaataatgcattgttctgtaattttgattatgatttttcaagcttcttta |
6262504 |
T |
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| Q |
107 |
cacaactaagacaaatttatgtatacct |
134 |
Q |
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| T |
6262503 |
cacaattaagacaaatttatgtatacct |
6262476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 150 - 301
Target Start/End: Complemental strand, 6261361 - 6261212
Alignment:
| Q |
150 |
cttagttacacttaaagttcctcacctctcttctaagatgcgtgactgataaacaatataaagcaaagtggtatatttgcaaatacacctaccgtaattc |
249 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
6261361 |
cttagttacacttaaagttcctcacctctcttctacgatgtgtgactgataaacaatatatagcaaagtggtatatttgcaaatacacctaccataattc |
6261262 |
T |
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| Q |
250 |
aacaaaaaatagaacctctttatgtcttcatcagttttctatagcaaagtgg |
301 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
6261261 |
aacaaaaaatagaac--ctttttgtcttcatcagttttctatagcaaagtgg |
6261212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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