View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_120 (Length: 300)
Name: NF11309A_low_120
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_120 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 2607929 - 2607640
Alignment:
| Q |
7 |
ttttaatcttaataaatttggcgaactttcatgtgatgattgtgct-gtcatactcaaatttgtgcaatgcatggat----gtnnnnnnnnnnttggttg |
101 |
Q |
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| T |
2607929 |
ttttaatcttaataaatttggcgaactttcatgtgatgattgtgcttgtcatacttaaatttgtgcaatgcatggattattgtaaaaaaaatattggttg |
2607830 |
T |
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| Q |
102 |
ggtttatttgaagttgtaagaattgaagcaaagcattgtaagnnnnnnngttagtagaactgaatgatatcaatgttaaactaagtgtttaaagactact |
201 |
Q |
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| T |
2607829 |
ggtttatttgaagt---aagaattgaagcaaagcattgtaagttgctttgttagtagaactgaatgatatcaatgttaaaccaagtgtttaaagactact |
2607733 |
T |
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| Q |
202 |
aaatgccaatgtacaattattattttttgtacaatttattgaactttatcatcacgtgtaagctttattgcaaatttatgtggaccacacatt |
294 |
Q |
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| T |
2607732 |
aaatgccaatgtacaattattatattttgtacaatttattgaactttatcatcacgtgtaagctgtattgcaaatttatgtggaccacacatt |
2607640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 151 - 294
Target Start/End: Complemental strand, 2606276 - 2606134
Alignment:
| Q |
151 |
gttagtagaactgaatgatatcaatgttaaactaagtgtttaaagactactaaatgccaatgtacaattattattttttgtacaatttattgaactttat |
250 |
Q |
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| T |
2606276 |
gttagtagaactgaatgatatcaatgttaaaccaagtgt--aaagaccgctaaatgccaatttacaattattattttttgtacaatttattcaactttat |
2606179 |
T |
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| Q |
251 |
c-atcacgtgtaagctttattgcaaatttatgtggaccacacatt |
294 |
Q |
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| T |
2606178 |
caatcacgtgtaagctgtattgcaaatttatgtggaccacacatt |
2606134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 2577900 - 2577838
Alignment:
| Q |
17 |
aataaatttggcgaactttcatgtgatgattgtgc-tgtcatactcaaatttgtgcaatgcat |
78 |
Q |
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|||||||||||||||||||||| |||| |||| | ||| ||||| ||||||||||||||||| |
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| T |
2577900 |
aataaatttggcgaactttcatttgattattggacttgttatacttaaatttgtgcaatgcat |
2577838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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