View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_125 (Length: 294)
Name: NF11309A_low_125
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_125 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 41222729 - 41223021
Alignment:
| Q |
1 |
gtcactttataaaaatattcttggctccgccactagttaatgattgttgtaaataaaaatgacttctaaactatttttaattgactaatatgatattggt |
100 |
Q |
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| T |
41222729 |
gtcacttcataaaaatatttttggctccgccactagt-aatgattgttgtaaataaaaatgacttctaaactatttttaattgactaatatgatattggt |
41222827 |
T |
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| Q |
101 |
caagtgggaacaactgacctccataagaaaacaaatcattggaaaactcgagtttaaatttgataggattacttcatacaaaagacgataactgnnnnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
41222828 |
caagtgggaacaactgacctccataagaaaacaaaccattggaaaactcgagtttaaatttgataggatcacttcatataaaagacgataactgaaaaaa |
41222927 |
T |
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| Q |
201 |
ntatattgctgaatcccacggattagagattagtctcacaaacctctctaaagagacgaagttatatagatacataccttcataaactcgttga |
294 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
41222928 |
atatattgctgaatcccatggattagagattagtctcacaaacctctctaaagagacgaagttatgtagatatataccttcataaactcgttga |
41223021 |
T |
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