View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_127 (Length: 292)
Name: NF11309A_low_127
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_127 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 7 - 285
Target Start/End: Complemental strand, 6356200 - 6355922
Alignment:
| Q |
7 |
atttgaactataacattgtgatcctaatctcatcaactactataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccaaata |
106 |
Q |
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| T |
6356200 |
atttgaactataacattgtgatcctaatctcatcaactactataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccatata |
6356101 |
T |
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| Q |
107 |
tagtgtaatacatttaaagcatattcaaagatgttttctggtgtaacaggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaa |
206 |
Q |
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| T |
6356100 |
tagtgtaatacatttaaagcatattcaaagatgttttctggtgtaacaggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaa |
6356001 |
T |
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| Q |
207 |
agaatactttggatatcaacgccctcactgctgctaaaagccctactggtatcattggtggtgcctttgatattattgg |
285 |
Q |
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| T |
6356000 |
agaatactttggatatcaacgccctcactgctgctaaaagccctactggtatcattggtggtgcctttggtattgttgg |
6355922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 39 - 285
Target Start/End: Complemental strand, 7463269 - 7463023
Alignment:
| Q |
39 |
tcaactactataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccaaatatagtgtaatacatttaaagcatattcaaagat |
138 |
Q |
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| T |
7463269 |
tcaactactatagatactaagcacccccatggttacaagacacaggcatttctttcatttaccaaatatagtgtaatatatttaaagcatattcaaagat |
7463170 |
T |
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| Q |
139 |
gttttctggtgtaacaggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaaagaatactttggatatcaacgccctcactgct |
238 |
Q |
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| T |
7463169 |
gttttcaggggtaactggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaaagaatgcgttggacattgatgccctaactgca |
7463070 |
T |
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| Q |
239 |
gctaaaagccctactggtatcattggtggtgcctttgatattattgg |
285 |
Q |
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| T |
7463069 |
actaataaccctacaggtatcattggtggtgccataggtattattgg |
7463023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 6365599 - 6365430
Alignment:
| Q |
38 |
atcaactactataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccaaatatagtgtaatacatttaaagcatattcaaaga |
137 |
Q |
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| T |
6365599 |
atcaactactataaatactaagcatccccttggtaacaaaacacaagcttttctttcatttaccaaagatagtgtaatacattt-aagca---ttaaaga |
6365504 |
T |
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| Q |
138 |
tgttttctggtgtaacaggtctctttgatagaggccaaaagttgaagggaactgtggtgttgatgcaaaagaat |
211 |
Q |
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| T |
6365503 |
tgagttcattggtgaaaggtctctttgataagcaccaaaaggtgaagggaactgtggtgttgatgcaaaagaat |
6365430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 6373264 - 6373177
Alignment:
| Q |
37 |
catcaactactataaatactaacca-cccctatggttacaagacacaagcctttctttcatttaccaaatatagtgtaatacatttaa |
123 |
Q |
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| T |
6373264 |
catcaagtactataaatagtaagcatccccaatggttacaagacacaaacatttctttcatttgacaaagatagtgtaatacatttaa |
6373177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 6393179 - 6393093
Alignment:
| Q |
37 |
catcaactactataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccaaatatagtgtaatacatttaa |
123 |
Q |
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| T |
6393179 |
catcaagtagtataaataccaagcatccccatggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaa |
6393093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 6412320 - 6412233
Alignment:
| Q |
37 |
catcaactactataaatactaaccacccct-atggttacaagacacaagcctttctttcatttaccaaatatagtgtaatacatttaa |
123 |
Q |
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| T |
6412320 |
catcaagtactataaatactaagcatcccacaaggttacaagacacaaacatttctttcattagccaaagatagtgtaatacatttaa |
6412233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 6373685 - 6373611
Alignment:
| Q |
48 |
ataaatactaaccacccctatggttacaagacacaagcctttctttcatttaccaaatatagtgtaatacatttaa |
123 |
Q |
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| T |
6373685 |
ataaatacaaaccaccc-tatggttaaaagacacaagcttttctttcattagccaaagatattgtaatacgtttaa |
6373611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 6426680 - 6426643
Alignment:
| Q |
174 |
aaaagttgaagggaactgtggtgttgatgcaaaagaat |
211 |
Q |
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| T |
6426680 |
aaaagttaaagggaactgtggtgttgatgcaaaagaat |
6426643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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