View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_13 (Length: 527)

Name: NF11309A_low_13
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_13
NF11309A_low_13
[»] chr1 (2 HSPs)
chr1 (164-527)||(4082508-4082873)
chr1 (13-114)||(4082353-4082452)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 164 - 527
Target Start/End: Original strand, 4082508 - 4082873
Alignment:
Q  164 aaactacctttgagatacaacatatgtaacaatttcaacatattcagtttggttagttgatgatgagcatgggtccatactcatcggagccgcatgatac 263  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4082508 aaactacctttgagatacaacatgtgtaacaatttcaacatattcagtttcgttagttgatgatgagcatgggtccatactcatcggagccgcatgatac 4082607  T
Q  264 aatggaagttaaataaaaatcttattctatcaactaaattttccaagtttagactctctctttcccctacatgtttccttccctacaactccaaaatttg 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4082608 aatggaagttaaataaaaatcttattctatcaactaaattttccaagtttagactctctctttcccctacatgtttccttccctacaactccaaaatttg 4082707  T
Q  364 agcaaccatatacggttttcttnnnnnnnnnnnnnnnnnnnnnnnnntttccatttgatcatttcccaaaac--catatatatttctataggaatttgaa 461  Q
    ||||||||||||||||||||||                         |||||||||||||||||||||||||   |||||||||||||||||||||| ||    
T  4082708 agcaaccatatacggttttcttcaacaaaccaaaccaaaaaacaaaatttccatttgatcatttcccaaaactatatatatatttctataggaatttcaa 4082807  T
Q  462 ttccccagacacccttcaatcatcatttgccaagaaacaaaaccattaaatagcaagaacaagaca 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  4082808 ttccccagacacccttcaatcatcatttgccaagaaacaaaaccattaaatcgcaggaacaagaca 4082873  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 114
Target Start/End: Original strand, 4082353 - 4082452
Alignment:
Q  13 aatatagatttaaaaacaaaagaaagaagacgagaatgagacaagagactagagttccaatannnnnnnnataagagaattggagagagtttcagtattg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||  ||||||||||||||||    
T  4082353 aatatagatttaaaaacaaaagaaagaagacgagaatgagacaagagactagagttccaatattttttttataagagaattg--gagagtttcagtattg 4082450  T

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