View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_130 (Length: 291)
Name: NF11309A_low_130
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_130 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 291
Target Start/End: Original strand, 36474138 - 36474414
Alignment:
| Q |
15 |
tatatcaacatggataagaactttaattaaagaaaagaaatttaagattcaattttgaaggaatcaggtctcaatcaccagtgaaaaatatgattagcaa |
114 |
Q |
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| T |
36474138 |
tatatcaacatggataagaactttaattaaagaaaagaaatttaagattcaattttgaaggaatcaggtctcaatcaccagtgaaaaatatgattagcaa |
36474237 |
T |
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| Q |
115 |
agttgttaacatccagtcagggaaaatgagattgaaagcaacaccaagactgattccaagcattaacattggttgaaaaagaagtgctaaatcatagtca |
214 |
Q |
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| T |
36474238 |
agttgttaacatccagtcagggaaaatgagattgaaagcaacaccaagactgattccaagcattaacattggttggaaaagaagtgctaaatcatagtca |
36474337 |
T |
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| Q |
215 |
atcacaggcaggtcaagtgttggatgtcttttcttcaagttgtataaaacagttgctcctgctccaccagtaatcat |
291 |
Q |
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| T |
36474338 |
atcacaggcaggtcaagtgttgggtgtcttttcttcaagttgtataaaacagttgctcctgctccaccagtaatcat |
36474414 |
T |
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Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 95 - 291
Target Start/End: Original strand, 36465040 - 36465236
Alignment:
| Q |
95 |
gtgaaaaatatgattagcaaagttgttaacatccagtcagggaaaatgagattgaaagcaacaccaagactgattccaagcattaacattggttgaaaaa |
194 |
Q |
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| T |
36465040 |
gtgaaaaatattagtatcaaagatgttatcatccagtcaggaaaaatgacattaaaagcaacaccaagactgattccaagcattaacattggttgaaaaa |
36465139 |
T |
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| Q |
195 |
gaagtgctaaatcatagtcaatcacaggcaggtcaagtgttggatgtcttttcttcaagttgtataaaacagttgctcctgctccaccagtaatcat |
291 |
Q |
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| T |
36465140 |
gaagtgctaaatcatagtcaatcacaggcaggtcaagtgttgggtgtctttgcctcaagttgtataaaacagttgctcctgctccacctgtaatcat |
36465236 |
T |
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