View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309A_low_131 (Length: 291)
Name: NF11309A_low_131
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_131 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 29467152 - 29467415
Alignment:
| Q |
21 |
aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29467152 |
aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct |
29467251 |
T |
|
| Q |
121 |
ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggagtcctaacatcc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
29467252 |
ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccatcaatgtcggaatcgctttctggaatcctaacatcc |
29467351 |
T |
|
| Q |
221 |
gtaaacatcagattattcctaatctccctattcaaactcctgctctttctaaacctaacaccat |
284 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29467352 |
gtaaacatcggattattcctaatctccctattcaaactcctgctctttctaaacctaacaccat |
29467415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 29452676 - 29452909
Alignment:
| Q |
19 |
caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc |
118 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29452676 |
caaaattccctcaatcgttccttaatccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc |
29452775 |
T |
|
| Q |
119 |
ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggagtcctaacat |
218 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |
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|
| T |
29452776 |
ctttcaaactccccaacaacaacatctctctgttcagttcatgtaacggccttctcttcattaccaccaatgtcggaatcgctttctggaaccctaacat |
29452875 |
T |
|
| Q |
219 |
ccgtaaacatcagattattcctaatctccctatt |
252 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
29452876 |
ccgtaaacatcagaatattcctaatctccctatt |
29452909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 29424035 - 29423828
Alignment:
| Q |
22 |
aattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctt |
121 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |||||||||||| ||||| |
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|
| T |
29424035 |
aattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctt |
29423936 |
T |
|
| Q |
122 |
tcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggagtcctaacatccg |
221 |
Q |
| |
|
||||| | |||||||||||||||||||| |||| ||||||||||||||||||||| | | | || ||| | |||||||||||||| |||| |||| | |
|
|
| T |
29423935 |
tcaaaggctccaacaacttcatctctctggtcggatcatgtaacggccttctctgcctcttctccgatggtgaaatcgctttctggaaccctaccatctg |
29423836 |
T |
|
| Q |
222 |
taaacatc |
229 |
Q |
| |
|
|||||||| |
|
|
| T |
29423835 |
taaacatc |
29423828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 29442684 - 29442901
Alignment:
| Q |
19 |
caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc |
118 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||| || |||||||||| ||| |
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|
| T |
29442684 |
caaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaagatttctctaacctaaccaccggcgttaaactcaacattc |
29442783 |
T |
|
| Q |
119 |
ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggagtcctaacat |
218 |
Q |
| |
|
|||||| | |||| |||| ||| ||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| |
|
|
| T |
29442784 |
ctttcacaggtcccatcaaccgcatgtctcttctaggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacat |
29442883 |
T |
|
| Q |
219 |
ccgtaaacatcagattat |
236 |
Q |
| |
|
||||||||| | |||||| |
|
|
| T |
29442884 |
ccgtaaacaccggattat |
29442901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 5e-65; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 14551143 - 14550910
Alignment:
| Q |
20 |
aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc |
119 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14551143 |
aaaattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc |
14551044 |
T |
|
| Q |
120 |
tttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggagtcctaacatc |
219 |
Q |
| |
|
|||| || | ||||||||||||||||||| |||||||||||||||| ||||||| ||| | |||||| || ||| ||||| |||| ||||||||| |
|
|
| T |
14551043 |
tttcgaaggcttcaacaacttcatctctctgctcggttcatgtaacggtcttctctacatcttttccaatggcgaaattgctttatggaaccctaacatc |
14550944 |
T |
|
| Q |
220 |
cgtaaacatcagattattcctaatctccctattc |
253 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||||| |
|
|
| T |
14550943 |
cgtaaacatcgcattatccctgatctccctattc |
14550910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 151 - 253
Target Start/End: Original strand, 12005616 - 12005718
Alignment:
| Q |
151 |
ttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggagtcctaacatccgtaaacatcagattattcctaatctcccta |
250 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| | || |||| ||||||||| ||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
12005616 |
ttcggttcatgtaacggcctcctctgcatttcctccaaagccgaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctcccta |
12005715 |
T |
|
| Q |
251 |
ttc |
253 |
Q |
| |
|
||| |
|
|
| T |
12005716 |
ttc |
12005718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 12018381 - 12018482
Alignment:
| Q |
152 |
tcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggagtcctaacatccgtaaacatcagattattcctaatctccctat |
251 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||| || |||||||||||||| ||| ||||||||||||||| |||||| ||| |||||||||| |
|
|
| T |
12018381 |
tcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaacccttacatccgtaaacatcggattatccctcatctccctat |
12018480 |
T |
|
| Q |
252 |
tc |
253 |
Q |
| |
|
|| |
|
|
| T |
12018481 |
tc |
12018482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 11986979 - 11987075
Alignment:
| Q |
151 |
ttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggagtcctaacatccgtaaacatcagattattcctaatctcc |
247 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| || |||||||||||||| ||||||| ||||||||||| |||||| ||| |||||| |
|
|
| T |
11986979 |
ttcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaaccctaacacccgtaaacatcggattatccctcatctcc |
11987075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 249
Target Start/End: Original strand, 12012047 - 12012142
Alignment:
| Q |
154 |
ggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggagtcctaacatccgtaaacatcagattattcctaatctccct |
249 |
Q |
| |
|
||||||||||||||||| ||||||||||| | || || || ||| ||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12012047 |
ggttcatgtaacggcctcatctgcatttcctcaaacaccgaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccct |
12012142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 8572827 - 8572882
Alignment:
| Q |
20 |
aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatc |
75 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| ||||| |||| ||||||||||| |
|
|
| T |
8572827 |
aaaattccctcaatcgttccttaatcattcgacgcaactacgatatctaccaaatc |
8572882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 9292751 - 9292699
Alignment:
| Q |
20 |
aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaa |
72 |
Q |
| |
|
||||||||||||| || | |||||||||||||||||| | |||| |||||||| |
|
|
| T |
9292751 |
aaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaa |
9292699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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