View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11309A_low_132 (Length: 290)

Name: NF11309A_low_132
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11309A_low_132
NF11309A_low_132
[»] chr1 (15 HSPs)
chr1 (15-212)||(52248249-52248446)
chr1 (217-271)||(43571130-43571184)
chr1 (217-271)||(5489778-5489832)
chr1 (213-271)||(7447824-7447881)
chr1 (217-271)||(37814780-37814834)
chr1 (217-271)||(48499006-48499060)
chr1 (217-267)||(14427349-14427399)
chr1 (217-271)||(50448304-50448358)
chr1 (217-270)||(750350-750403)
chr1 (215-271)||(4401327-4401384)
chr1 (203-262)||(35003282-35003341)
chr1 (217-260)||(38335920-38335963)
chr1 (217-271)||(24769543-24769597)
chr1 (217-267)||(44112679-44112729)
chr1 (217-267)||(48119630-48119680)
[»] scaffold0119 (1 HSPs)
scaffold0119 (217-271)||(687-741)
[»] chr6 (15 HSPs)
chr6 (217-271)||(26670053-26670107)
chr6 (217-271)||(7273379-7273433)
chr6 (215-271)||(30735982-30736038)
chr6 (217-271)||(3213402-3213456)
chr6 (217-271)||(9698377-9698431)
chr6 (217-271)||(26466801-26466855)
chr6 (214-271)||(24204031-24204088)
chr6 (217-271)||(30014345-30014399)
chr6 (217-271)||(33242405-33242459)
chr6 (213-260)||(27441540-27441587)
chr6 (217-271)||(7292749-7292803)
chr6 (217-271)||(7367551-7367605)
chr6 (217-271)||(13743265-13743319)
chr6 (217-271)||(13748765-13748819)
chr6 (217-271)||(21293721-21293775)
[»] chr7 (17 HSPs)
chr7 (217-271)||(35069723-35069777)
chr7 (217-271)||(5015397-5015451)
chr7 (217-271)||(24001056-24001110)
chr7 (217-271)||(42538475-42538529)
chr7 (217-271)||(42972854-42972908)
chr7 (217-262)||(5194284-5194329)
chr7 (217-262)||(5810977-5811022)
chr7 (215-271)||(44326178-44326234)
chr7 (217-260)||(43317445-43317488)
chr7 (213-271)||(44416978-44417036)
chr7 (214-271)||(10573748-10573805)
chr7 (215-271)||(16180401-16180456)
chr7 (215-271)||(43343668-43343724)
chr7 (217-248)||(38160661-38160692)
chr7 (217-271)||(41861676-41861730)
chr7 (217-246)||(9216304-9216333)
chr7 (215-271)||(4638243-4638299)
[»] chr5 (11 HSPs)
chr5 (213-271)||(25915031-25915089)
chr5 (217-271)||(33855087-33855141)
chr5 (217-271)||(2614693-2614747)
chr5 (217-271)||(18033984-18034038)
chr5 (217-271)||(22512307-22512361)
chr5 (217-271)||(41334707-41334761)
chr5 (217-271)||(7617135-7617189)
chr5 (217-267)||(32473442-32473492)
chr5 (217-271)||(33801471-33801525)
chr5 (215-271)||(5256995-5257051)
chr5 (217-271)||(38470581-38470635)
[»] chr3 (19 HSPs)
chr3 (217-271)||(42100690-42100744)
chr3 (214-271)||(1078226-1078283)
chr3 (217-271)||(25413683-25413737)
chr3 (217-271)||(46941055-46941109)
chr3 (217-271)||(47191070-47191123)
chr3 (217-271)||(54246192-54246246)
chr3 (215-271)||(27748563-27748619)
chr3 (217-271)||(40808867-40808921)
chr3 (217-271)||(54237098-54237152)
chr3 (217-271)||(4190309-4190363)
chr3 (217-271)||(24688446-24688500)
chr3 (217-271)||(42394463-42394517)
chr3 (217-271)||(45126972-45127026)
chr3 (219-262)||(29558287-29558330)
chr3 (217-271)||(25996270-25996324)
chr3 (217-267)||(34791831-34791881)
chr3 (217-271)||(53273728-53273782)
chr3 (217-262)||(36150132-36150177)
chr3 (215-260)||(53581913-53581958)
[»] chr8 (18 HSPs)
chr8 (215-271)||(30912606-30912662)
chr8 (215-271)||(42295195-42295251)
chr8 (215-271)||(42699257-42699313)
chr8 (217-271)||(29705364-29705418)
chr8 (217-271)||(2546998-2547052)
chr8 (217-271)||(11582768-11582822)
chr8 (217-271)||(36743527-36743581)
chr8 (215-271)||(20148760-20148816)
chr8 (217-252)||(28977148-28977183)
chr8 (215-262)||(33630046-33630093)
chr8 (217-271)||(2166007-2166061)
chr8 (217-271)||(30660786-30660840)
chr8 (217-271)||(45397318-45397372)
chr8 (215-271)||(29800994-29801050)
chr8 (217-261)||(42197489-42197533)
chr8 (217-260)||(5754905-5754948)
chr8 (217-267)||(35181518-35181568)
chr8 (214-271)||(26125634-26125691)
[»] chr4 (23 HSPs)
chr4 (217-271)||(1771310-1771364)
chr4 (215-271)||(43514730-43514786)
chr4 (213-271)||(39631098-39631157)
chr4 (217-271)||(27550311-27550365)
chr4 (217-267)||(28988475-28988525)
chr4 (217-270)||(35017735-35017788)
chr4 (217-271)||(27316757-27316811)
chr4 (217-271)||(33703143-33703197)
chr4 (214-271)||(43949845-43949903)
chr4 (217-262)||(41878408-41878453)
chr4 (217-271)||(12496958-12497012)
chr4 (217-271)||(25051695-25051749)
chr4 (215-267)||(3756294-3756346)
chr4 (215-271)||(27893886-27893942)
chr4 (217-260)||(28982877-28982920)
chr4 (218-260)||(23204833-23204875)
chr4 (217-271)||(27864566-27864620)
chr4 (213-263)||(41327595-41327645)
chr4 (214-260)||(43735741-43735787)
chr4 (217-271)||(55966390-55966444)
chr4 (217-262)||(711962-712007)
chr4 (217-262)||(23035982-23036027)
chr4 (215-255)||(46412519-46412559)
[»] chr2 (20 HSPs)
chr2 (217-271)||(1750416-1750470)
chr2 (217-271)||(16096749-16096803)
chr2 (215-271)||(33229301-33229358)
chr2 (217-271)||(12302297-12302351)
chr2 (217-271)||(30838634-30838688)
chr2 (217-267)||(34817824-34817874)
chr2 (205-267)||(41282022-41282084)
chr2 (215-261)||(43490455-43490501)
chr2 (217-271)||(4764770-4764824)
chr2 (217-267)||(12415508-12415558)
chr2 (217-267)||(12427568-12427618)
chr2 (217-267)||(18491707-18491757)
chr2 (217-271)||(19047159-19047213)
chr2 (217-271)||(43335807-43335861)
chr2 (217-250)||(42849911-42849944)
chr2 (214-258)||(7070415-7070459)
chr2 (215-267)||(11825702-11825754)
chr2 (217-267)||(966882-966932)
chr2 (217-267)||(43114559-43114609)
chr2 (215-243)||(8896655-8896683)
[»] scaffold0187 (2 HSPs)
scaffold0187 (217-260)||(14243-14286)
scaffold0187 (217-260)||(24571-24614)
[»] scaffold0157 (1 HSPs)
scaffold0157 (217-271)||(23465-23519)
[»] scaffold0038 (1 HSPs)
scaffold0038 (217-271)||(112657-112711)
[»] scaffold0003 (1 HSPs)
scaffold0003 (213-260)||(45774-45821)
[»] scaffold0385 (1 HSPs)
scaffold0385 (217-271)||(11253-11307)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 52248446 - 52248249
Alignment:
Q  15 agtacataattatacggcaattttgatttcactgggcaaagtagtgtagtacacaaagtgtcccgttataataagtcatgacatgtgaagttcgtaacac 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52248446 agtacataagtatacggcaattttgatttcactgggcaaagtagtgtagtacacaaagtgtcccgttataataagtcatgacatgtgaagttcgtaacac 52248347  T
Q  115 atactactccatatatattagtatgcttaaatggtcacgtcctgagaatacatgtcacaatatatattgacctagagagaaaagctagcaattttatc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  52248346 atactactccatatatattagtatgcttaaatggtcacgtcctgagaatacatgtcacaatatatattgacctagagagaaaagctagccattttatc 52248249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 43571184 - 43571130
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43571184 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtatt 43571130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 5489778 - 5489832
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||| | |||||||||||  |||||||    
T  5489778 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtatt 5489832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 7447824 - 7447881
Alignment:
Q  213 ttgaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||||    
T  7447824 ttgaaaaatgttacatgaacatcctttattcctacatcccattgtacacc-catgtatt 7447881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 37814780 - 37814834
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||    
T  37814780 aaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtatt 37814834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 48499060 - 48499006
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||| ||||||| ||||||  ||||||||||||||||||||    
T  48499060 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtatt 48499006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 14427349 - 14427399
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||| || ||||||  |||||||||||||||    
T  14427349 aaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatg 14427399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 50448358 - 50448304
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||| ||||||| ||||||  |||||||||||| |||||||    
T  50448358 aaaatgttacatgaacactctttatttctacactccattgtacaccttatgtatt 50448304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 750403 - 750350
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtat 270  Q
    |||||||||| |||||||||||  |||||||||| ||||||||||| |||||||    
T  750403 aaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtat 750350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 4401327 - 4401384
Alignment:
Q  215 gaaaaatgttacatgaacacccttt-attcctacacctcattgtacacctcatgtatt 271  Q
    |||||||| ||||||||||| |||| |||||||||| |||||||||||| ||||||||    
T  4401327 gaaaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtatt 4401384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 35003282 - 35003341
Alignment:
Q  203 caattttatcttgaaaaatgttacatgaacaccctttattcctacacctcattgtacacc 262  Q
    ||||||| | ||| |||||||||||||||||||||||| || ||||||  ||||||||||    
T  35003282 caatttttttttggaaaatgttacatgaacaccctttaatcatacaccctattgtacacc 35003341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 38335920 - 38335963
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtaca 260  Q
    |||||||||||||||||||||||| || ||||||| ||||||||    
T  38335920 aaaatgttacatgaacaccctttaatcatacaccttattgtaca 38335963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 24769597 - 24769543
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||| |||||||||| |||||| ||||||  ||||||||||| ||||||||    
T  24769597 aaaatgtttcatgaacaccttttatttctacactccattgtacaccccatgtatt 24769543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 44112679 - 44112729
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||| || ||||||  |||||||||| ||||    
T  44112679 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatg 44112729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 48119630 - 48119680
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||| || ||||||  |||||||||| ||||    
T  48119630 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatg 48119680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 687 - 741
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  687 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 26670107 - 26670053
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26670107 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 26670053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 7273433 - 7273379
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  7273433 aaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtatt 7273379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 30735982 - 30736038
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||    
T  30735982 gaaaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtatt 30736038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 3213402 - 3213456
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||    
T  3213402 aaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtatt 3213456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 9698431 - 9698377
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||| | |||||||||||  |||||||    
T  9698431 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtatt 9698377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 26466801 - 26466855
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||  ||||||||    
T  26466801 aaaatgttacataaacaccctttattcctacaccccattgtacactccatgtatt 26466855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 24204088 - 24204031
Alignment:
Q  214 tgaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||| ||||||||||||||  |||||||||  ||||||||    
T  24204088 tgaaaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtatt 24204031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 30014345 - 30014399
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||| | |||| |||| | ||||||||    
T  30014345 aaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtatt 30014399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 33242405 - 33242459
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||| |||| || ||||||| |||||||||| ||||||||    
T  33242405 aaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtatt 33242459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 27441540 - 27441587
Alignment:
Q  213 ttgaaaaatgttacatgaacaccctttattcctacacctcattgtaca 260  Q
    |||||||||||||||||||||||||||| || ||||||  ||||||||    
T  27441540 ttgaaaaatgttacatgaacaccctttaatcatacaccctattgtaca 27441587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 7292749 - 7292803
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||| ||||||| ||||||| ||||||||||| ||||||  |||||||    
T  7292749 aaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtatt 7292803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 7367551 - 7367605
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||| ||||||| | ||||||| |||||||||||||||| | ||||||||    
T  7367551 aaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtatt 7367605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 13743319 - 13743265
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||| ||||||| |||| |  |||||||||| ||||||||    
T  13743319 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtatt 13743265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 13748819 - 13748765
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||| ||||||| |||| |  |||||||||| ||||||||    
T  13748819 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtatt 13748765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 21293775 - 21293721
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||| |||||||||||||| ||||  ||| |||||||| ||||||||    
T  21293775 aaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtatt 21293721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 35069723 - 35069777
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35069723 aaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtatt 35069777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 5015397 - 5015451
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||| ||||||| ||||||  ||||||||||||||||||||    
T  5015397 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtatt 5015451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 24001110 - 24001056
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||| | |||||||||||  |||||||    
T  24001110 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtatt 24001056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 42538529 - 42538475
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||| | |||||||||||  |||||||    
T  42538529 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtatt 42538475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 42972854 - 42972908
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||| |||||| |||||||||||||||  ||||||||||||||||||||    
T  42972854 aaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtatt 42972908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 5194329 - 5194284
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacc 262  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||    
T  5194329 aaaatgttacatgaacaccatttattcatacacctcattgtacacc 5194284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 5811022 - 5810977
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacc 262  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||    
T  5811022 aaaatgttacatgaccaccctttattcctacaccccattgtacacc 5810977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 44326178 - 44326234
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||| |||||||||||||| |||| | ||||||||||||||| ||||    
T  44326178 gaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatatt 44326234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 43317445 - 43317488
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtaca 260  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||    
T  43317445 aaaatgttacatgaacaccatttattcatacacctcattgtaca 43317488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 44417036 - 44416978
Alignment:
Q  213 ttgaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||||| | |||||| |||||||  |||||||||| ||||||||    
T  44417036 ttgaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtatt 44416978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 10573748 - 10573805
Alignment:
Q  214 tgaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||| |||||||||||||| |||| |  |||||||||| ||||||||    
T  10573748 tgaaaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtatt 10573805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 16180456 - 16180401
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||| |||||| |||||||||||||| ||||||||||| || |||||    
T  16180456 gaaaaatgttacatcaacaccatttattcctacacc-cattgtacaccccacgtatt 16180401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 43343724 - 43343668
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||| | |||||| |||||||  |||||||||| ||||||||    
T  43343724 gaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtatt 43343668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 248
Target Start/End: Complemental strand, 38160692 - 38160661
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctaca 248  Q
    ||||||||||||||||||||||||||||||||    
T  38160692 aaaatgttacatgaacaccctttattcctaca 38160661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 41861676 - 41861730
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||||||||||| ||||||  ||| ||||||  |||||||    
T  41861676 aaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtatt 41861730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 246
Target Start/End: Original strand, 9216304 - 9216333
Alignment:
Q  217 aaaatgttacatgaacaccctttattccta 246  Q
    ||||||||||||||||||||||||||||||    
T  9216304 aaaatgttacatgaacaccctttattccta 9216333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 4638299 - 4638243
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||||| ||||||| |||||   |||||||||| ||| ||||    
T  4638299 gaaaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatatt 4638243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 213 - 271
Target Start/End: Complemental strand, 25915089 - 25915031
Alignment:
Q  213 ttgaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  25915089 ttgaaaaatgttacatgaacaccctttattcctacacctcattgtacacccaatgtatt 25915031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 33855141 - 33855087
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  33855141 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtatt 33855087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 2614747 - 2614693
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||| | |||||||||||  |||||||    
T  2614747 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtatt 2614693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 18033984 - 18034038
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||  |||||||||||  |||||||    
T  18033984 aaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtatt 18034038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 22512307 - 22512361
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||  ||||||||||  ||||||||    
T  22512307 aaaatgttacatgaacaccctttattcctacactccattgtacactccatgtatt 22512361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 41334761 - 41334707
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||  |||||||    
T  41334761 aaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtatt 41334707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 7617135 - 7617189
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||||||||||| |||||  |||| |||||| ||||||||    
T  7617135 aaaatgttacatgaacaccctttattcatacactccattatacaccccatgtatt 7617189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 32473492 - 32473442
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||| || ||||||| |||||||||| ||||    
T  32473492 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatg 32473442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 33801471 - 33801525
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||| |||||||| ||||||| ||||||||||  ||||||||    
T  33801471 aaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtatt 33801525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 5256995 - 5257051
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||| |||||| ||||||| |||| | ||||||||||| ||||||||    
T  5256995 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtatt 5257051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 38470581 - 38470635
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||| |||||||||||||| ||||   ||||||||||| ||||||||    
T  38470581 aaaatgttacataaacaccctttattcatacattccattgtacaccccatgtatt 38470635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 42100690 - 42100744
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42100690 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtatt 42100744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 1078226 - 1078283
Alignment:
Q  214 tgaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  1078226 tgaaaaatgttacatgaacaccctttattcctgcacctcattgtacacctaatgtatt 1078283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 25413683 - 25413737
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  25413683 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtatt 25413737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 46941055 - 46941109
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  46941055 aaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtatt 46941109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 47191123 - 47191070
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47191123 aaaatgttacatgaacaccctttattcctacacctcattgtacacc-catgtatt 47191070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 54246246 - 54246192
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||| |||||||||||  |||||||    
T  54246246 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtatt 54246192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 27748563 - 27748619
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||||| ||||||| ||||||||||| ||||||| |||||||    
T  27748563 gaaaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtatt 27748619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 40808867 - 40808921
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||| |||||| |||||||||||||| ||||||||||| ||||||||    
T  40808867 aaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtatt 40808921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 54237098 - 54237152
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||| | |||||||||||  |||||||    
T  54237098 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtatt 54237152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 4190363 - 4190309
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||| || ||||||  ||||||||||| |||||||    
T  4190363 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtatt 4190309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 24688500 - 24688446
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||| ||||||  |||||||||||  |||||||    
T  24688500 aaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtatt 24688446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 42394517 - 42394463
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||||||||||||||||   |||||||||||  |||||||    
T  42394517 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtatt 42394463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 45127026 - 45126972
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||| |||||||||||||| |||| | ||||||||||| ||||||||    
T  45127026 aaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtatt 45126972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 262
Target Start/End: Complemental strand, 29558330 - 29558287
Alignment:
Q  219 aatgttacatgaacaccctttattcctacacctcattgtacacc 262  Q
    ||||||| ||||||||||||||||| |||| |||||||||||||    
T  29558330 aatgttatatgaacaccctttattcatacatctcattgtacacc 29558287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 25996270 - 25996324
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||| || |||| || |||||||||| ||| ||||    
T  25996270 aaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatatt 25996324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 34791831 - 34791881
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||| || ||||||  |||||| ||||||||    
T  34791831 aaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatg 34791881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 53273782 - 53273728
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||| ||||||| | |||||||||| ||||||||||||| | ||||||||    
T  53273782 aaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtatt 53273728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 36150132 - 36150177
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacc 262  Q
    ||||||||||||||| ||||||||||| |||||| |||| ||||||    
T  36150132 aaaatgttacatgaataccctttattcatacaccccattatacacc 36150177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 53581958 - 53581913
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtaca 260  Q
    |||||||||||||||||||| |||||||| |||||  |||||||||    
T  53581958 gaaaaatgttacatgaacactctttattcatacactccattgtaca 53581913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 30912662 - 30912606
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  30912662 gaaaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtatt 30912606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 42295195 - 42295251
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  42295195 gaaaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtatt 42295251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 42699257 - 42699313
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  42699257 gaaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtatt 42699313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 29705364 - 29705418
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||    
T  29705364 aaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtatt 29705418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 2546998 - 2547052
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||| ||||||| ||||||  ||||||||||||||||||||    
T  2546998 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtatt 2547052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 11582768 - 11582822
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||| | |||||||||||  |||||||    
T  11582768 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtatt 11582822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 36743581 - 36743527
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||| | |||||||||||  |||||||    
T  36743581 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtatt 36743527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 20148760 - 20148816
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||| |||||||||||||| |||| | ||||||||||||||| ||||    
T  20148760 gaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatatt 20148816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 252
Target Start/End: Original strand, 28977148 - 28977183
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctc 252  Q
    ||||||||||||||||||||||||||||||||||||    
T  28977148 aaaatgttacatgaacaccctttattcctacacctc 28977183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 262
Target Start/End: Complemental strand, 33630093 - 33630046
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacc 262  Q
    ||||||||||||| |||||||||||| || ||||||||||||||||||    
T  33630093 gaaaaatgttacacgaacaccctttaatcatacacctcattgtacacc 33630046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 2166061 - 2166007
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||| ||||||||||||| |||||||||||||| ||||||| ||| ||||||||    
T  2166061 aaaatattacatgaacaccatttattcctacaccccattgtataccccatgtatt 2166007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 30660840 - 30660786
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||  |||||||    
T  30660840 aaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtatt 30660786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 45397318 - 45397372
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||| ||||||||||||||||||||||| |||| ||||||  |||||||    
T  45397318 aaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtatt 45397372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 29801050 - 29800994
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||| |||||| ||||||| |||| | ||||||||||| ||||||||    
T  29801050 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtatt 29800994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 42197533 - 42197489
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacac 261  Q
    ||||||||||||||||||| |||||||||||||| ||||| ||||    
T  42197533 aaaatgttacatgaacaccatttattcctacaccccattgcacac 42197489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 5754905 - 5754948
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtaca 260  Q
    ||||||||||||||||||| |||||||||||| | |||||||||    
T  5754905 aaaatgttacatgaacaccttttattcctacatcccattgtaca 5754948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 35181518 - 35181568
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||| || ||||||  |||||||||| ||||    
T  35181518 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatg 35181568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 26125634 - 26125691
Alignment:
Q  214 tgaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||| |||||||||||||| ||||   |||||||||||  |||||||    
T  26125634 tgaaaaatgttacataaacaccctttattcatacattccattgtacaccctatgtatt 26125691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 1771364 - 1771310
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  1771364 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtatt 1771310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 43514786 - 43514730
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||||  |||||||||| |||||||||    
T  43514786 gaaaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtatt 43514730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 39631098 - 39631157
Alignment:
Q  213 ttgaaaaatgttacatgaacacccttt-attcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  39631098 ttgaaaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtatt 39631157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 27550311 - 27550365
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||||||||||    
T  27550311 aaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtatt 27550365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 28988475 - 28988525
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  28988475 aaaatgttacatgaacaccctttattcatacacctcattgtacaccccatg 28988525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 35017735 - 35017788
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtat 270  Q
    |||||||||||||||||||||||||||||| | ||||||||||||| |||||||    
T  35017735 aaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgtat 35017788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 27316811 - 27316757
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||| | ||||||||||||||||||||||||||| |||||| ||||||||    
T  27316811 aaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtatt 27316757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 33703143 - 33703197
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||| ||||| || |||||||||| ||||||||    
T  33703143 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtatt 33703197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 271
Target Start/End: Complemental strand, 43949903 - 43949845
Alignment:
Q  214 tgaaaaatgttacatgaacacccttt-attcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||||||| ||||||||    
T  43949903 tgaaaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtatt 43949845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 41878408 - 41878453
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacc 262  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  41878408 aaaatgttacatgaacactctttattcatacacctcattgtacacc 41878453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 12496958 - 12497012
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||| |||||||||||||||||||||||  ||||||||| | ||||||||    
T  12496958 aaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtatt 12497012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 25051695 - 25051749
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||| |||||||||| ||||||||||||||| |||||||||||  |||||||    
T  25051695 aaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtatt 25051749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 3756346 - 3756294
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||||| || ||||||  |||||||||| ||||    
T  3756346 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatg 3756294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 271
Target Start/End: Complemental strand, 27893942 - 27893886
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||| |||||| ||||||| |||| | ||||||||||| ||||||||    
T  27893942 gaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtatt 27893886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 28982920 - 28982877
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtaca 260  Q
    |||||||||||||||||||||||||| |||||||  ||||||||    
T  28982920 aaaatgttacatgaacaccctttatttctacaccctattgtaca 28982877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 260
Target Start/End: Complemental strand, 23204875 - 23204833
Alignment:
Q  218 aaatgttacatgaacaccctttattcctacacctcattgtaca 260  Q
    ||||||||||||||||| ||||||||||||| | |||||||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtaca 23204833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 27864566 - 27864620
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||| |||||| ||||||| |||| | ||||||||||| ||||||||    
T  27864566 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtatt 27864620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Complemental strand, 41327645 - 41327595
Alignment:
Q  213 ttgaaaaatgttacatgaacaccctttattcctacacctcattgtacacct 263  Q
    ||||||||||||||||  |||||||||||||  ||||| ||||||||||||    
T  41327645 ttgaaaaatgttacatagacaccctttattcacacaccccattgtacacct 41327595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 43735741 - 43735787
Alignment:
Q  214 tgaaaaatgttacatgaacaccctttattcctacacctcattgtaca 260  Q
    |||||||| ||||||||||| |||||||||||||| |||||| ||||    
T  43735741 tgaaaaatattacatgaacatcctttattcctacatctcattataca 43735787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 55966444 - 55966390
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||| |||||||||||||| |||| | ||||||||| | ||||||||    
T  55966444 aaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtatt 55966390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 711962 - 712007
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacc 262  Q
    |||||||||||||||||||||||| || ||||||  ||||||||||    
T  711962 aaaatgttacatgaacaccctttaatcatacaccctattgtacacc 712007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 23035982 - 23036027
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacc 262  Q
    ||||||||||||||||  ||||||||||||||||  ||||||||||    
T  23035982 aaaatgttacatgaacctcctttattcctacaccctattgtacacc 23036027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 46412559 - 46412519
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcatt 255  Q
    |||||||||||| |||||||| ||||||||||||| |||||    
T  46412559 gaaaaatgttacgtgaacaccttttattcctacacttcatt 46412519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 1750416 - 1750470
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||| |||||||||||  |||||||    
T  1750416 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtatt 1750470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 16096749 - 16096803
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||||||||||| |||| |||||| ||||||||    
T  16096749 aaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtatt 16096803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 33229301 - 33229358
Alignment:
Q  215 gaaaaatgttacatgaacacccttt-attcctacacctcattgtacacctcatgtatt 271  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  33229301 gaaaaatgatacatgaacacccttttattcctacacctcattgtacaccccatgtatt 33229358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 12302351 - 12302297
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||  |||||||    
T  12302351 aaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtatt 12302297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 30838634 - 30838688
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||||||||||||||||| ||||| || |||||||||| ||||||||    
T  30838634 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtatt 30838688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 34817874 - 34817824
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  34817874 aaaatgttacatgaacaccctttattcacacacctcattgtacaccccatg 34817824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 41282084 - 41282022
Alignment:
Q  205 attttatcttgaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    ||||| |||||||||||||||||||||||||||||| || ||||||  |||||||||| ||||    
T  41282084 attttttcttgaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatg 41282022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 43490501 - 43490455
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacac 261  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||    
T  43490501 gaaaaatgttacatgaacaccctttattcctacatcccattgtacac 43490455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 4764824 - 4764770
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    |||||||||||| |||||| ||||||||||||||  |||||||||| ||||||||    
T  4764824 aaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtatt 4764770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 12415558 - 12415508
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||| || ||||||| |||||||||| ||||    
T  12415558 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatg 12415508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 12427618 - 12427568
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||| || ||||||| |||||||||| ||||    
T  12427618 aaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatg 12427568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 18491707 - 18491757
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||| || ||||||  |||||||||||||||    
T  18491707 aaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatg 18491757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 19047159 - 19047213
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||||||||||||||||   |||||||||||  |||||||    
T  19047159 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtatt 19047213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 43335861 - 43335807
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||| ||||||| | |||||||||||||||||||||||| | ||||||||    
T  43335861 aaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtatt 43335807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 42849944 - 42849911
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacc 250  Q
    ||||||||||||||||||||||||||||||||||    
T  42849944 aaaatgttacatgaacaccctttattcctacacc 42849911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 7070415 - 7070459
Alignment:
Q  214 tgaaaaatgttacatgaacaccctttattcctacacctcattgta 258  Q
    |||||||||||||||||||||||||||||| |||| | |||||||    
T  7070415 tgaaaaatgttacatgaacaccctttattcatacatcccattgta 7070459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 11825754 - 11825702
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||||| || ||||||  |||||||||| ||||    
T  11825754 gaaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatg 11825702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 966932 - 966882
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||| || ||||||  |||||||||| ||||    
T  966932 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatg 966882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 43114559 - 43114609
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatg 267  Q
    |||||||||||||||||||||||| || ||||||  |||||||||| ||||    
T  43114559 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatg 43114609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 8896683 - 8896655
Alignment:
Q  215 gaaaaatgttacatgaacaccctttattc 243  Q
    |||||||||||||||||||||||||||||    
T  8896683 gaaaaatgttacatgaacaccctttattc 8896655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 14286 - 14243
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtaca 260  Q
    |||||||||||||||||||||||||| ||||||| |||||||||    
T  14286 aaaatgttacatgaacaccctttatttctacaccccattgtaca 14243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 260
Target Start/End: Complemental strand, 24614 - 24571
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtaca 260  Q
    |||||||||||||||||||||||||| ||||||| |||||||||    
T  24614 aaaatgttacatgaacaccctttatttctacaccccattgtaca 24571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 23519 - 23465
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||| |||||||||||||||||||||||  ||||||||| | ||||||||    
T  23519 aaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtatt 23465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 112657 - 112711
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||||||||||||||||||||||||||||   |||||||||||  |||||||    
T  112657 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtatt 112711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 260
Target Start/End: Complemental strand, 45821 - 45774
Alignment:
Q  213 ttgaaaaatgttacatgaacaccctttattcctacacctcattgtaca 260  Q
    |||||||||||||||||||||||||||| || ||||||  ||||||||    
T  45821 ttgaaaaatgttacatgaacaccctttaatcatacaccctattgtaca 45774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 11253 - 11307
Alignment:
Q  217 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtatt 271  Q
    ||||||| |||||||||| |||||||| |||||| ||||||||||| ||| ||||    
T  11253 aaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatatt 11307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University