View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_133 (Length: 290)
Name: NF11309A_low_133
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_133 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 51181053 - 51181336
Alignment:
| Q |
7 |
gaaaccatgcaaacaaacgctgtagatagaagtcctaggattcttcaatattaagaggcacctaatattgtcttgtgttcctgttgcttttatgtattgg |
106 |
Q |
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| T |
51181053 |
gaaaccatgcaaacaaacactgtagatagaagtcctaggattcttcaatattaagaggcacctaattttgtcttgtgttcctgttgcttttatgtattgg |
51181152 |
T |
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| Q |
107 |
ttctgaacttctgatacaagttatgtttagcagctatctaacggacattgttgtcagattttgccaagagaaagtagcgaaacaaaggtacctactttac |
206 |
Q |
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| T |
51181153 |
ttctgaacttctgatacaagttatgtttagcagctatctaacggacattgttgtcagattttgccaagagaaagtagcgaaacaaaggtacctactttac |
51181252 |
T |
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| Q |
207 |
ttactactcatgttaaacttgtacggttcatgaatataatcataaagcacaagaaataatttcgcacagcaattaaatctttag |
290 |
Q |
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| T |
51181253 |
ttactattcatgttaaacttgtacggttcatgaatataatcataaagcacaagaaataatttcgcacagcaattaaatctttag |
51181336 |
T |
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Target: chr4 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 97 - 288
Target Start/End: Complemental strand, 14181522 - 14181331
Alignment:
| Q |
97 |
tatgtattggttctgaacttctgatacaagttatgtttagcagctatctaacggacattgttgtcagattttgccaagagaaagtagcgaaacaaaggta |
196 |
Q |
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| T |
14181522 |
tatgtattggttctgaacttctgatacaagttatgtttagcagctatctgacggacattctcatcagatttcgccaagagacagtagcgaaacaaaggta |
14181423 |
T |
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| Q |
197 |
cctactttacttactactcatgttaaacttgtacggttcatgaatataatcataaagcacaagaaataatttcgcacagcaattaaatcttt |
288 |
Q |
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| T |
14181422 |
tttactttacttactactcatgttaaacttgtgtggttcatgaatataatcataaagcacaagaaataattttgcacagcgattaaatcttt |
14181331 |
T |
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