View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309A_low_145 (Length: 280)
Name: NF11309A_low_145
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_145 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 22292126 - 22291917
Alignment:
| Q |
23 |
gtttcttcaattccattcattaattatgtaaatttgcaattagattcacaacacaatcacatttgggtctctgatgagaacagggtaatagttgattgaa |
122 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22292126 |
gtttcttcaattgcattcattaattttgtaaatttgcaattagattcacaacacaatcacatttggggctctgatgagaacagggtaatagttgattgaa |
22292027 |
T |
|
| Q |
123 |
tcggatccactaattttgttgttgtatttgacctcaagaattcaccagaagcctcacccttcacatcaaagccaaatgaatgaaaaccattcggtttcat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22292026 |
tcggatccactaattttgttgttgtatttgacttcaagaattcaccagaagcctcacccttcacatcaaagccaaatgaatgaaaaccattcggtttcat |
22291927 |
T |
|
| Q |
223 |
tctcagtttc |
232 |
Q |
| |
|
|||||||||| |
|
|
| T |
22291926 |
tctcagtttc |
22291917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 15434152 - 15434052
Alignment:
| Q |
23 |
gtttcttcaattccattcattaattatgtaaatttgcaattagattcacaacacaatcacatttgggtctctgatgagaacagggtaatagttgattgaa |
122 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15434152 |
gtttcttcaattccattcattaattttgtaaatttgcaattagattcacaacagaatcagatttgggtctctgatgagaacaggctaatagttgattgaa |
15434053 |
T |
|
| Q |
123 |
t |
123 |
Q |
| |
|
| |
|
|
| T |
15434052 |
t |
15434052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 53559393 - 53559297
Alignment:
| Q |
157 |
caagaattcaccagaagcctcacccttcacatcaaagccaaatgaatgaaaaccattcggtttcattctcagtttcacccctcactttcatcttctc |
253 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
53559393 |
caagaattcaccagaagcctgacccctcacatcaaagccaaatgaatgaaaaccattcggtttcaatctcagtttcacccctcactttcatcttctc |
53559297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 17682459 - 17682554
Alignment:
| Q |
23 |
gtttcttcaattccattcattaattatg-taaatttgcaattagattcacaacacaatcacatttgggtctctgatgagaacagggtaatagttga |
117 |
Q |
| |
|
|||||||||||||||||||||| | | ||||||||||||||| ||||||||||| ||| |||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
17682459 |
gtttcttcaattccattcattattggtaataaatttgcaattaggttcacaacacagtcagatttgggtctctgacgagaatagggtcatagttga |
17682554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 254
Target Start/End: Original strand, 17682568 - 17682599
Alignment:
| Q |
223 |
tctcagtttcacccctcactttcatcttctct |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
17682568 |
tctcagtttcacccctcactttcatcttctct |
17682599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University