View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11309A_low_149 (Length: 277)
Name: NF11309A_low_149
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_149 |
 | |
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| [»] scaffold0015 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 5381616 - 5381378
Alignment:
| Q |
14 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga |
113 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5381616 |
gaaccagaaaaagaagaagttttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga |
5381517 |
T |
|
| Q |
114 |
tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5381516 |
tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagtggtagttg |
5381417 |
T |
|
| Q |
214 |
tgaaaatgtggtgtcgaactacatggtaaagaagttaga |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5381416 |
tgaaaatgtggtgtcgaactacatggtagagaagttaga |
5381378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 13721383 - 13721145
Alignment:
| Q |
14 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
13721383 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgttgatcatggcgagtctctggtgatcagacgaagcctacacgcga |
13721284 |
T |
|
| Q |
114 |
tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
13721283 |
tgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactactggaaaggtttgtgatgttataatagacagtggtagttg |
13721184 |
T |
|
| Q |
214 |
tgaaaatgtggtgtcgaactacatggtaaagaagttaga |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13721183 |
tgaaaatgtggtgtcgaactacatggtagagaagttaga |
13721145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 24341682 - 24341603
Alignment:
| Q |
90 |
tgatcagacgaagcctacacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcacc |
169 |
Q |
| |
|
|||||| | |||| ||||||| ||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||| |
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|
| T |
24341682 |
tgatcataggaaggctacacatgatgtcagcacaagaagagcattacttgaggaaaaacatttttcatactcgttgcacc |
24341603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 27798 - 27560
Alignment:
| Q |
14 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
27798 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacgcga |
27699 |
T |
|
| Q |
114 |
tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
27698 |
tgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggtagttg |
27599 |
T |
|
| Q |
214 |
tgaaaatgtggtgtcgaactacatggtaaagaagttaga |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27598 |
tgaaaatgtggtgtcgaactacatggtagagaagttaga |
27560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 88291 - 88529
Alignment:
| Q |
14 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
88291 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacgcga |
88390 |
T |
|
| Q |
114 |
tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
88391 |
tgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggtagttg |
88490 |
T |
|
| Q |
214 |
tgaaaatgtggtgtcgaactacatggtaaagaagttaga |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
88491 |
tgaaaatgtggtgtcgaactacatggtagagaagttaga |
88529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 11713145 - 11713383
Alignment:
| Q |
14 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11713145 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacgcga |
11713244 |
T |
|
| Q |
114 |
tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11713245 |
tgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggtagttg |
11713344 |
T |
|
| Q |
214 |
tgaaaatgtggtgtcgaactacatggtaaagaagttaga |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11713345 |
tgaaaatgtggtgtcgaactacatggtagagaagttaga |
11713383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 20 - 252
Target Start/End: Original strand, 13162360 - 13162592
Alignment:
| Q |
20 |
gaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacgatgtcag |
119 |
Q |
| |
|
|||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
13162360 |
gaaaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgttcagacgaagcctacacgcgatgtcag |
13162459 |
T |
|
| Q |
120 |
ctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttgtgaaaa |
219 |
Q |
| |
|
| ||||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13162460 |
cccaagaagagcattggttgacgaaaaacatcatccatactcgttgcaccactgctggaaaagtttgtgatattataatagatagtggtagttgtgaaaa |
13162559 |
T |
|
| Q |
220 |
tgtggtgtcgaactacatggtaaagaagttaga |
252 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
13162560 |
tgtggtgtcgaactacatggtagagaagttaga |
13162592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 252
Target Start/End: Original strand, 42377163 - 42377401
Alignment:
| Q |
14 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
42377163 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctagtgatcagacgaagcctacacgcga |
42377262 |
T |
|
| Q |
114 |
tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42377263 |
tgtcagctcaagaagagtattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagtggtagttg |
42377362 |
T |
|
| Q |
214 |
tgaaaatgtggtgtcgaactacatggtaaagaagttaga |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42377363 |
tgaaaatgtggtgtcgaactacatggtagagaagttaga |
42377401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 14475146 - 14474908
Alignment:
| Q |
14 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14475146 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacgcga |
14475047 |
T |
|
| Q |
114 |
tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14475046 |
tgtcagctcaagaagagcattggttgagcaaaaacatttttcatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagtggtagttg |
14474947 |
T |
|
| Q |
214 |
tgaaaatgtggtgtcgaactacatggtaaagaagttaga |
252 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
14474946 |
tgaaaatgtggtgtcgaactacatggtagagaatttaga |
14474908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 2795396 - 2795158
Alignment:
| Q |
14 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
2795396 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctagtgatcagacgaagcctacacgcga |
2795297 |
T |
|
| Q |
114 |
tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg |
213 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2795296 |
tgtcagctcaagaagaacatttgttgaggaaaaacattttccatactcgttgcaccactgccggaaaagtttgtgatgttataatagacagtggtagttg |
2795197 |
T |
|
| Q |
214 |
tgaaaatgtggtgtcgaactacatggtaaagaagttaga |
252 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2795196 |
tgaaaatgtggtgtcgaactacatggtggagaagttaga |
2795158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 16776040 - 16775804
Alignment:
| Q |
14 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
16776040 |
gaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgaatctctagtgataagacgaagcctacacacga |
16775941 |
T |
|
| Q |
114 |
tgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16775940 |
tgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagtggtagttt |
16775841 |
T |
|
| Q |
214 |
tgaaaatgtggtgtcgaactacatggtaaagaagtta |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16775840 |
tgaaaatgtggtgtcgaactacatggtagagaagtta |
16775804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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