View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_151 (Length: 276)
Name: NF11309A_low_151
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_151 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 30315988 - 30315727
Alignment:
| Q |
9 |
ttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30315988 |
ttattcttgattaatttattcatagtacaaaaggtggaactctagttacaattacaagataatgccgttttattctttgctcactatgagctatagttcc |
30315889 |
T |
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| Q |
109 |
ttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttcc |
208 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30315888 |
ttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttccctttcc |
30315789 |
T |
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| Q |
209 |
ctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30315788 |
ctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30315727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 30287447 - 30287193
Alignment:
| Q |
9 |
ttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcc |
108 |
Q |
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||||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||| ||||||||||||| |||| |||||||||||||||| |
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| T |
30287447 |
ttattcttgattaatttattcatagtagaaa-ggaggaactctagtta------caagataatgccgttttattcttttctcattatgagctatagttcc |
30287355 |
T |
|
| Q |
109 |
ttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttcc |
208 |
Q |
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| T |
30287354 |
ttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttccctttcc |
30287255 |
T |
|
| Q |
209 |
ctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30287254 |
ctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30287193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 30305121 - 30304861
Alignment:
| Q |
9 |
ttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcc |
108 |
Q |
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|
|||||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| | ||||| ||| |||||||| ||| |
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| T |
30305121 |
ttattcttgattcagttattcatagtagaaa-ggtggaactctagttatagttacaagataatgccgttttattcatcgctcattattagctatagctcc |
30305023 |
T |
|
| Q |
109 |
ttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttcc |
208 |
Q |
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|| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30305022 |
atatatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttccctttcc |
30304923 |
T |
|
| Q |
209 |
ctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30304922 |
ctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30304861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 9 - 270
Target Start/End: Complemental strand, 30300323 - 30300069
Alignment:
| Q |
9 |
ttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcc |
108 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||||||||| || ||||||| || ||||||||||| ||||||||||||||||| ||| |
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| T |
30300323 |
ttattcttgattaatttattcatggtggaaa-ggtggaactctagata------caagatattgccgttttattctctgctcactatgagctatgactcc |
30300231 |
T |
|
| Q |
109 |
ttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttcc |
208 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
30300230 |
ttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttgtctctggcttcgaccttcttccctttcc |
30300131 |
T |
|
| Q |
209 |
ctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
270 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30300130 |
ctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30300069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 12 - 270
Target Start/End: Complemental strand, 30292467 - 30292227
Alignment:
| Q |
12 |
ttcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcactatgagctatagttcctta |
111 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||| || |
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| T |
30292467 |
ttcttgattaatttattcatagtaggaaag-tggaactctagttatagttacaagctaatgccgttttattcattgctcactatgagct---------ta |
30292378 |
T |
|
| Q |
112 |
cagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttccctt |
211 |
Q |
| |
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|||||||| |||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30292377 |
gagcatacaagcataataag--------cattaaaacgttcccgaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttccctt |
30292286 |
T |
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| Q |
212 |
tgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
270 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30292285 |
tgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaac |
30292227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 270
Target Start/End: Complemental strand, 46810582 - 46810518
Alignment:
| Q |
206 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaac |
270 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| || ||||||| |||||| ||||| |
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| T |
46810582 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaac |
46810518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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