View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11309A_low_153 (Length: 276)
Name: NF11309A_low_153
Description: NF11309A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11309A_low_153 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 7 - 265
Target Start/End: Complemental strand, 33492516 - 33492269
Alignment:
| Q |
7 |
gtccaatcatgagtaacttgaaattgtggtgtgactatgagaatagtgtatttgtgctgtgatgtgtcaaaaatataatactcacattatgaatatata- |
105 |
Q |
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| T |
33492516 |
gtccaatcatgagtaacttgaaattgtggtgtgactatgagaatagtgtatttgtgctgtgatgtgtcaaaaata-------ctcattatgaatatatat |
33492424 |
T |
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| Q |
106 |
-cctcatatcatgttaatgatcgatagttctttcnnnnnnnnnnnnncccatgttaatgatagtcttcaaataagaagtgatttaggacgatgatgggag |
204 |
Q |
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| T |
33492423 |
acctcatatcatgttaatcat----agttctttcaaaaaaaaaaaa--ccatattaatgatagtcttcaaataagaagtgatttaggacgatgatgggag |
33492330 |
T |
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| Q |
205 |
gaagacaagtgttgggacttgggatctatgattacataatgaaaacatgcacatcatattg |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33492329 |
gaagacaagtgttgggacttgggatctatgattacataatgaaaacatgcacatcgtattg |
33492269 |
T |
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